annotate test-data/haca.snoRNA-default.stdout @ 0:59055c49a112 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/mlocarna commit 0065dafe7bbd382bb995b28cc4089c9e4f4eeeb9

1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.8.12
2 Copyright Sebastian Will
3 
4 Compute pair probs ...
5 Compute pairwise alignments ... 
6 Perform progressive alignment ...
7 
8 
9 
10 ACA7               ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG
11 ACA30              UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG
12 ACA5               UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG
13 ACA59              GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA
14 #A1                ................................................................AAAAAA..................................................
15 #A2                ................................................................123456..................................................
16 
17 ACA7               AUUGGA--AGA---CACU-CUGCG-----ACA
18 ACA30              CAACUG--UCA---CUCA-AUGGG-----ACA
19 ACA5               GGAUAA--AUU---UGGU-UACAG-----ACA
20 ACA59              ACAAUACUUACUCUCGUUGGUGAUAAGGAACA
21 #A1                .............................BBB
22 #A2                .............................123
23 
24 alifold            .((((((((........((((.(((((((......))))))).))))......))..)))))).............((((((.....((.....((((((((((((.....)))))))))
25                    )))......)).....)).))))......... (-61.69 = -33.85 + -27.84)