Mercurial > repos > rnateam > rbpbench
diff test-data/test_search.gtf @ 0:7dd2835ce566 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0e21bd630200c1f199db8ba5d83b81d4214fc59f
| author | rnateam |
|---|---|
| date | Sun, 03 Dec 2023 12:51:54 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_search.gtf Sun Dec 03 12:51:54 2023 +0000 @@ -0,0 +1,11 @@ +chr1 HAVANA gene 21 60 . + . gene_id "g1"; gene_type "protein_coding"; gene_name "GENE1"; +chr1 HAVANA transcript 21 60 . + . gene_id "g1"; transcript_id "g1_t1"; transcript_type "protein_coding"; gene_type "protein_coding"; transcript_name "g1_t1"; level 1; transcript_support_level "2"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA exon 21 60 . + . gene_id "g1"; transcript_id "g1_t1"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t1-202"; exon_number 1; exon_id "g1_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA CDS 31 44 . + . gene_id "g1"; transcript_id "g1_t1"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t1-202"; exon_number 1; exon_id "g1_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA transcript 21 60 . + . gene_id "g1"; transcript_id "g1_t2"; transcript_type "protein_coding"; gene_type "protein_coding"; transcript_name "g1_t2"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA exon 21 60 . + . gene_id "g1"; transcript_id "g1_t2"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t2-202"; exon_number 1; exon_id "g1_t2_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA CDS 31 44 . + . gene_id "g1"; transcript_id "g1_t2"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t2-202"; exon_number 1; exon_id "g1_t2_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA gene 21 60 . - . gene_id "g2"; gene_type "lncRNA"; gene_name "GENE2"; +chr1 HAVANA transcript 20 60 . - . gene_id "g2"; transcript_id "g2_t1"; transcript_type "lncRNA"; gene_type "lncRNA"; transcript_name "g2_t1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA exon 51 60 . - . gene_id "g2"; transcript_id "g2_t1"; gene_type "lncRNA"; gene_name "GENE1"; transcript_type "lncRNA"; transcript_name "g2_t1-202"; exon_number 1; exon_id "g2_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical"; +chr1 HAVANA exon 21 40 . - . gene_id "g2"; transcript_id "g2_t1"; gene_type "lncRNA"; gene_name "GENE1"; transcript_type "lncRNA"; transcript_name "g2_t1-202"; exon_number 2; exon_id "g2_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";