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view test-data/test_custom.seq_motifs.meme @ 0:7dd2835ce566 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0e21bd630200c1f199db8ba5d83b81d4214fc59f
author rnateam
date Sun, 03 Dec 2023 12:51:54 +0000
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MEME version 5

ALPHABET= ACGT

strands: +

Background letter frequencies
A 0.250000 C 0.250000 G 0.250000 T 0.250000

MOTIF PUM1_1 
letter-probability matrix: alength= 4 w= 7 nsites= 20 E= 0
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.223900  0.184800  0.212700  0.378600 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.835718  0.164282 
 0.041300  0.041200  0.876300  0.041200 

MOTIF PUM1_2 
letter-probability matrix: alength= 4 w= 9 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.500000  0.500000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.500000  0.000000  0.500000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  0.000000  1.000000 

MOTIF PUM1_3 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.919505  0.080495  0.000000  0.000000 
 0.145800  0.458500  0.168500  0.227200 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.100031  0.899969 
 0.867950  0.132050  0.000000  0.000000 

MOTIF PUM2_1 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.397900  0.158200  0.026000  0.417900 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.843493  0.000000  0.000000  0.156507 

MOTIF PUM2_2 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  1.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 0.000000  1.000000  0.000000  0.000000 

MOTIF PUM2_3 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 

MOTIF PUM2_4 
letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 0
 0.000000  0.000000  0.000000  1.000000 
 0.000000  0.000000  1.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  1.000000  0.000000 
 1.000000  0.000000  0.000000  0.000000 
 0.000000  0.000000  0.000000  1.000000 
 1.000000  0.000000  0.000000  0.000000 

MOTIF PUM2_5 
letter-probability matrix: alength= 4 w= 10 nsites= 20 E= 0
 0.253775  0.137486  0.112989  0.495750 
 0.270800  0.141400  0.146600  0.441200 
 0.000000  0.000000  0.000000  1.000000 
 0.072132  0.000000  0.896223  0.031646 
 0.000000  0.000000  0.000000  1.000000 
 0.968974  0.000000  0.031026  0.000000 
 0.232400  0.319800  0.028700  0.419100 
 0.932355  0.000000  0.000000  0.067645 
 0.121986  0.000000  0.173847  0.704167 
 0.517200  0.063500  0.123600  0.295700