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view test-data/test_search.gtf @ 3:6d2c5b92e9e0 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rbpbench commit 0a5e323ea389a19e7b372a8870e50f59d1d09f64
author rnateam
date Mon, 18 Dec 2023 19:03:27 +0000
parents 7dd2835ce566
children
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chr1	HAVANA	gene	21	60	.	+	.	gene_id "g1"; gene_type "protein_coding"; gene_name "GENE1";
chr1	HAVANA	transcript	21	60	.	+	.	gene_id "g1"; transcript_id "g1_t1"; transcript_type "protein_coding"; gene_type "protein_coding"; transcript_name "g1_t1"; level 1; transcript_support_level "2"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	exon	21	60	.	+	.	gene_id "g1"; transcript_id "g1_t1"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t1-202"; exon_number 1; exon_id "g1_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	CDS	31	44	.	+	.	gene_id "g1"; transcript_id "g1_t1"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t1-202"; exon_number 1; exon_id "g1_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	transcript	21	60	.	+	.	gene_id "g1"; transcript_id "g1_t2"; transcript_type "protein_coding"; gene_type "protein_coding"; transcript_name "g1_t2"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	exon	21	60	.	+	.	gene_id "g1"; transcript_id "g1_t2"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t2-202"; exon_number 1; exon_id "g1_t2_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	CDS	31	44	.	+	.	gene_id "g1"; transcript_id "g1_t2"; gene_type "protein_coding"; gene_name "GENE1"; transcript_type "protein_coding"; transcript_name "g1_t2-202"; exon_number 1; exon_id "g1_t2_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	gene	21	60	.	-	.	gene_id "g2"; gene_type "lncRNA"; gene_name "GENE2";
chr1	HAVANA	transcript	20	60	.	-	.	gene_id "g2"; transcript_id "g2_t1"; transcript_type "lncRNA"; gene_type "lncRNA"; transcript_name "g2_t1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	exon	51	60	.	-	.	gene_id "g2"; transcript_id "g2_t1"; gene_type "lncRNA"; gene_name "GENE1"; transcript_type "lncRNA"; transcript_name "g2_t1-202"; exon_number 1; exon_id "g2_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";
chr1	HAVANA	exon	21	40	.	-	.	gene_id "g2"; transcript_id "g2_t1"; gene_type "lncRNA"; gene_name "GENE1"; transcript_type "lncRNA"; transcript_name "g2_t1-202"; exon_number 2; exon_id "g2_t1_e1"; level 1; transcript_support_level "1"; tag "basic"; tag "Ensembl_canonical";