Mercurial > repos > rnateam > rnacode
comparison rnacode.xml @ 1:7a84c6c1c4e0 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnacode commit 608bf2d6f11fe6dceaa0060f729bdbb66cfee867
| author | rnateam |
|---|---|
| date | Sun, 12 Nov 2017 18:16:21 -0500 |
| parents | 2c51e264432a |
| children | 434332033e82 |
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| 0:2c51e264432a | 1:7a84c6c1c4e0 |
|---|---|
| 1 <tool id="rbc_rnacode" name="RNAcode" version="0.3.0"> | 1 <tool id="rbc_rnacode" name="RNAcode" version="0.3.0"> |
| 2 <description>Analyze the protein coding potential in MSA</description> | 2 <description>Analyze the protein coding potential in MSA.</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.3">rnacode</requirement> | 4 <requirement type="package" version="0.3">rnacode</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 7 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/> | 7 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/> |
| 79 <option value="--tabular" selected="true">Default</option> | 79 <option value="--tabular" selected="true">Default</option> |
| 80 <option value="--gtf">GTF genome annotation file</option> | 80 <option value="--gtf">GTF genome annotation file</option> |
| 81 </param> | 81 </param> |
| 82 </inputs> | 82 </inputs> |
| 83 <outputs> | 83 <outputs> |
| 84 <data argument="--outfile" name="outFileDefault" format="tabular" label="${tool.name} on ${on_string}"> | 84 <data name="outFileDefault" format="tabular" label="${tool.name} on ${on_string}"> |
| 85 <filter>outputFormat == '--tabular'</filter> | 85 <filter>outputFormat == '--tabular'</filter> |
| 86 </data> | 86 </data> |
| 87 <data argument="--outfile" name="outFileGTF" format="gtf" label="${tool.name} on ${on_string}"> | 87 <data name="outFileGTF" format="gtf" label="${tool.name} on ${on_string}"> |
| 88 <filter>outputFormat == '--gtf'</filter> | 88 <filter>outputFormat == '--gtf'</filter> |
| 89 </data> | 89 </data> |
| 90 <collection name="output_eps" type="list" label="Plots for ${tool.name} on ${on_string}"> | 90 <collection name="output_eps" type="list" label="Plots for ${tool.name} on ${on_string}"> |
| 91 <filter>cond_generateEPS['generateEPS'] == "create"</filter> | 91 <filter>cond_generateEPS['generateEPS'] == "create"</filter> |
| 92 <discover_datasets pattern="(?P<designation>.*)\.eps" directory="eps" ext="eps" visible="false"/> | 92 <discover_datasets pattern="(?P<designation>.*)\.eps" directory="eps" ext="eps" visible="false"/> |