Mercurial > repos > rnateam > rnacode
changeset 1:7a84c6c1c4e0 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/rnacode commit 608bf2d6f11fe6dceaa0060f729bdbb66cfee867
| author | rnateam |
|---|---|
| date | Sun, 12 Nov 2017 18:16:21 -0500 |
| parents | 2c51e264432a |
| children | 434332033e82 |
| files | rnacode.xml tool_dependencies.xml |
| diffstat | 2 files changed, 3 insertions(+), 20 deletions(-) [+] |
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--- a/rnacode.xml Fri Jun 19 11:13:11 2015 -0400 +++ b/rnacode.xml Sun Nov 12 18:16:21 2017 -0500 @@ -1,5 +1,5 @@ <tool id="rbc_rnacode" name="RNAcode" version="0.3.0"> - <description>Analyze the protein coding potential in MSA</description> + <description>Analyze the protein coding potential in MSA.</description> <requirements> <requirement type="package" version="0.3">rnacode</requirement> </requirements> @@ -81,10 +81,10 @@ </param> </inputs> <outputs> - <data argument="--outfile" name="outFileDefault" format="tabular" label="${tool.name} on ${on_string}"> + <data name="outFileDefault" format="tabular" label="${tool.name} on ${on_string}"> <filter>outputFormat == '--tabular'</filter> </data> - <data argument="--outfile" name="outFileGTF" format="gtf" label="${tool.name} on ${on_string}"> + <data name="outFileGTF" format="gtf" label="${tool.name} on ${on_string}"> <filter>outputFormat == '--gtf'</filter> </data> <collection name="output_eps" type="list" label="Plots for ${tool.name} on ${on_string}">
--- a/tool_dependencies.xml Fri Jun 19 11:13:11 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,17 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="rnacode" version="0.3"> - <install version="1.0"> - <actions> - <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/RNAcode/RNAcode-0.3.tar.gz</action> - <action type="autoconf"/> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - <environment_variable name="RNACODE_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable> - </action> - </actions> - </install> - <readme> - </readme> - </package> -</tool_dependency>