comparison selectsequencesfrommsa.xml @ 1:876c70c6ecad draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/selectsequencesfrommsa commit 3f736a6e9040a880a887c89271c9a8d5ac4c0c83-dirty

0:48fc2c21fe1c

<tool id="selectsequencesfrommsa" name="Select Sequences" version="1.0.2">
  <description>
    Tool to select representative sequences from a multiple sequence alignment.
  </description>
  <requirements>
    <requirement type="package" version="1.0.2">selectsequencesfrommsa</requirement>
  </requirements>
  <command detect_errors="aggressive"><![CDATA[
    SelectSequencesFromMSA
      -c '$input_clustal'
      $x
      -o `pwd`
      -n $n
      -i $i
      -m $m
      > warnings
    ]]>
  </command>
  <inputs>
    <param name="input_clustal" type="data" format="clustal" label="Input clustal alignment"/>

    <data format="clustal" name="clustal" from_work_dir="result.selected" label="Clustal alignment of selected sequences"/>
  </outputs>
  <tests>
    <test>
      <param name="input_clustal" value="result.clustal"/>
      <output name="result.selected" file="result.selected"/>
    </test>
  </tests>
  <help>
    
<![CDATA[

1:876c70c6ecad

<tool id="selectsequencesfrommsa" name="Select Sequences" version="1.0.5">
  <description>
    Tool to select representative sequences from a multiple sequence alignment.
  </description>
  <requirements>
    <requirement type="package" version="1.0.5">selectsequencesfrommsa</requirement>
  </requirements>
  <command detect_errors="aggressive"><![CDATA[
    SelectSequencesFromMSA
      -c '$input_clustal'
      $x
      -o `pwd`
      -n $n
      -i $i
      -m $m
      -f result.selected
      > warnings
    ]]>
  </command>
  <inputs>
    <param name="input_clustal" type="data" format="clustal" label="Input clustal alignment"/>

    <data format="clustal" name="clustal" from_work_dir="result.selected" label="Clustal alignment of selected sequences"/>
  </outputs>
  <tests>
    <test>
      <param name="input_clustal" value="result.clustal"/>
      <output name="clustal" file="result.selected"/>
    </test>
  </tests>
  <help>
    
<![CDATA[