Mercurial > repos > rnateam > sortmerna
comparison sortmerna.xml @ 4:1bdb57965c6f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit b'eebcbcf7ec7804eb97e6be0f417d01fd3422ab32\n'
| author | rnateam |
|---|---|
| date | Thu, 11 May 2017 10:28:11 -0400 |
| parents | 59252ca85c74 |
| children | cd8c76234b0c |
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| 3:59252ca85c74 | 4:1bdb57965c6f |
|---|---|
| 1 <tool id="bg_sortmerna" name="Filter with SortMeRNA" version="2.1b.1"> | 1 <tool id="bg_sortmerna" name="Filter with SortMeRNA" version="2.1b.2"> |
| 2 <description>Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data</description> | 2 <description>Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="2.1b">sortmerna</requirement> | 4 <requirement type="package" version="2.1b">sortmerna</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 115 </param> | 115 </param> |
| 116 <when value="not_paired" /> | 116 <when value="not_paired" /> |
| 117 <when value="paired"> | 117 <when value="paired"> |
| 118 <param name="paired_type" type="select" display="radio" label="If one of the paired-end reads aligns and the other one does not"> | 118 <param name="paired_type" type="select" display="radio" label="If one of the paired-end reads aligns and the other one does not"> |
| 119 <option value="">leave the reads split between aligned and rejected files</option> | 119 <option value="">leave the reads split between aligned and rejected files</option> |
| 120 <option value="--paired-in">output both reads to aligned file (--paired-in)</option> | 120 <option value="--paired_in">output both reads to aligned file (--paired_in)</option> |
| 121 <option value="--paired-out">output both reads to rejected file (--paired-out)</option> | 121 <option value="--paired_out">output both reads to rejected file (--paired_out)</option> |
| 122 </param> | 122 </param> |
| 123 </when> | 123 </when> |
| 124 </conditional> | 124 </conditional> |
| 125 | 125 |
| 126 <param name="strand_search" type="select" label="Which strands to search"> | 126 <param name="strand_search" type="select" label="Which strands to search"> |