Mercurial > repos > rnateam > sortmerna
diff sortmerna.xml @ 6:185effcdfb68 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 044a991b45c9135339daf138929887cd8e93a1bf
| author | rnateam |
|---|---|
| date | Tue, 06 Jun 2017 13:41:03 -0400 |
| parents | cd8c76234b0c |
| children | 1eafcc450052 |
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--- a/sortmerna.xml Wed May 31 14:55:32 2017 -0400 +++ b/sortmerna.xml Tue Jun 06 13:41:03 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="bg_sortmerna" name="Filter with SortMeRNA" version="@VERSION@.3"> +<tool id="bg_sortmerna" name="Filter with SortMeRNA" version="@VERSION@.4"> <description>Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data</description> <macros> <import>macros.xml</import> @@ -36,14 +36,14 @@ #end for #else if str( $databases_type.databases_selector ) == 'cached_to_index' ## databases path is not directly accessible, must match by hand with LOC file contents - #set $data_table = dict([(_[0], _[3]) for _ in $databases_type.input_databases.input.options.tool_data_table.data]) + #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data]) #for $db in $databases_type.input_databases.value #set $ref += $sep + $data_table[$db] + '.fasta,' + $data_table[$db] + '-reindexed' #set $sep = ':' #end for #else: ## databases path is not directly accessible, must match by hand with LOC file contents - #set $data_table = dict([(_[0], _[3]) for _ in $databases_type.input_databases.input.options.tool_data_table.data]) + #set $data_table = dict([(_[0], _[2]) for _ in $databases_type.input_databases.input.options.tool_data_table.data]) #for $db in $databases_type.input_databases.value #set $ref += $sep + $data_table[$db] + '.fasta,' + $data_table[$db] #set $sep = ':'