diff test-data/test2_log.txt @ 10:10b84b577117 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sortmerna commit 7dca92baf6a91f10bced28b883f14d3f4d7630c5

--- a/test-data/test2_log.txt	Wed Mar 20 03:03:08 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,34 +0,0 @@
- Sat Sep 23 09:30:45 2017
-
- Command: sortmerna --ref /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat,dataset_2 --aligned aligned --reads /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat --log --fastx -e 1.0 --match 2 --mismatch -3 --gap_open 5 --gap_ext 2 -N -3 -a 1 
- Process pid = 14406
- Parameters summary:
-    Index: dataset_2
-     Seed length = 18
-     Pass 1 = 18, Pass 2 = 9, Pass 3 = 3
-     Gumbel lambda = 0.605605
-     Gumbel K = 0.332977
-     Minimal SW score based on E-value = 17
-    Number of seeds = 2
-    Edges = 4 (as integer)
-    SW match = 2
-    SW mismatch = -3
-    SW gap open penalty = 5
-    SW gap extend penalty = 2
-    SW ambiguous nucleotide = -3
-    SQ tags are not output
-    Number of threads = 1 (OpenMP is not supported with your current C++ compiler).
-    Reads file = /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_1.dat
-
- Results:
-    Total reads = 1
-    Total reads passing E-value threshold = 1 (100.00%)
-    Total reads failing E-value threshold = 0 (0.00%)
-    Minimum read length = 89
-    Maximum read length = 89
-    Mean read length = 89
- By database:
-    /private/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpuYZa_K/files/000/dataset_2.dat		100.00%
-
- Sat Sep 23 09:30:45 2017
-