Mercurial > repos > rnateam > splitfasta

comparison splitFasta.xml @ 6:7521d865e770 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta commit 49709e680f90372edd2b8a2715d95e5949641afa
author bgruening
date Tue, 14 Jan 2025 21:52:36 +0000
parents 733ca84b21ee
children d5c640895ed6
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5:733ca84b21ee 6:7521d865e770
1 <tool id="rbc_splitfasta" name="Split Fasta" version="0.4.0"> 1 <tool id="rbc_splitfasta" name="Split Fasta" version="0.5.0" profile="23.0">
2 <description>files into a collection</description> 2 <description>files into a collection</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.76">biopython</requirement> 4 <requirement type="package" version="1.76">biopython</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 <![CDATA[ 7 <![CDATA[
8 #if $splitmode.splitmode_select == "each": 8 #if $splitmode.splitmode_select == "each":
9 python $__tool_directory__/split_fasta.py '$inputFile' 9 python $__tool_directory__/split_fasta.py --records '$inputFile.metadata.sequences' --limit "\${GALAXY_FILE_LIMIT:-0}" '$inputFile'
10 #else if $splitmode.splitmode_select == "chunks": 10 #else if $splitmode.splitmode_select == "chunks":
11 python $__tool_directory__/split_fasta.py '$inputFile' $splitmode.num_chunks 11 python $__tool_directory__/split_fasta.py --records '$inputFile.metadata.sequences' --limit "\${GALAXY_FILE_LIMIT:-0}" --num-chunks '$splitmode.num_chunks' '$inputFile'
12 #end if 12 #end if
13 ]]></command> 13 ]]></command>
14 <inputs> 14 <inputs>
15 <param name="inputFile" type="data" format="fasta" label="Fasta file to split"/> 15 <param name="inputFile" type="data" format="fasta" label="Fasta file to split"/>
16 <conditional name="splitmode"> 16 <conditional name="splitmode">