Mercurial > repos > rnateam > splitfasta
diff splitFasta.py @ 5:733ca84b21ee draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/splitfasta commit 31945d5d8c5ebee64ebf29c6ea022fb831f47274"
author | rnateam |
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date | Mon, 21 Sep 2020 15:40:14 +0000 |
parents | ae4d5733272f |
children |
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--- a/splitFasta.py Fri Oct 16 16:13:34 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,13 +0,0 @@ -#!/usr/bin/env python -import os -import sys -from Bio import SeqIO - -if __name__ == "__main__": - inpath = sys.argv[1] - os.mkdir('splits') - with open(inpath, 'r') as handle: - for record in SeqIO.parse(handle, 'fasta'): - header = os.path.join('splits', record.id + '.fasta') - with open(header, 'w') as handle2: - SeqIO.write([record], handle2, 'fasta')