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view splitfasta.xml @ 1:279e2625de3a draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit b1d68befbbaf3a74a67eef3e44dc035eb1a1e555
author rnateam
date Sun, 05 Jul 2015 08:48:09 -0400
parents bc25ba9d9fcf
children a9803f1fff75
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<tool id="rbc_splitfasta" name="SplitFasta" version="0.1.0">
    <requirements>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>

    <command interpreter="python">
    <![CDATA[
        splitFasta.py $inputFile; echo 'blah' > blah
    ]]></command>
    <inputs>
        <param name="inputFile" type="data" format="txt" label="Fasta file to split"/>
    </inputs>
    <outputs>
        <collection type="list">
            <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="false"/>
        </collection>
    </outputs>
    <help><![CDATA[
        Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection.
    ]]></help>
</tool>