view splitfasta.xml @ 3:7439ffbd8943 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hacked/splitFasta commit 9ffd40a178fb3aa8fff618f95d8b3fd7bf58240d

<tool id="rbc_splitfasta" name="SplitFasta" version="0.1.0">
    <requirements>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>

    <command interpreter="python">
    <![CDATA[
        splitFasta.py $inputFile
    ]]></command>
    <inputs>
        <param name="inputFile" type="data" format="fasta" label="Fasta file to split"/>
        <param name="outputFormat" type="select" label="Output Format">
            <option value="separate">Separate History Items</option>
            <option value="collection">Create dataset collection</option>
        </param>
    </inputs>
    <outputs>
        <collection type="list">
            <filter>outputFormat == 'collection'</filter>
            <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="false"/>
        </collection>
        <data name="output">
            <filter>outputFormat == 'separate'</filter>
            <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="splits" ext="fasta" visible="true"/>
        </data>
    </outputs>
    <help><![CDATA[
        Takes an input file and writes each consecutive two lines to a separate file, in a dataset collection.
    ]]></help>
    <citations>
            <citation type="bibtex">
            @ARTICLE{bgruening_galaxytools,
                Author = {Björn Grüning, Cameron Smith, Torsten Houwaart, Nicola Soranzo, Eric Rasche},
                keywords = {bioinformatics, ngs, galaxy, cheminformatics, rna},
                title = {{Galaxy Tools - A collection of bioinformatics and cheminformatics tools for the Galaxy environment}},
                url = {https://github.com/bgruening/galaxytools}
            }
        </citation>

    </citations>
</tool>