Mercurial > repos > rnateam > sshmm
comparison test-data/test_structure_final_model.xml @ 0:4b01f0d7b350 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/sshmm/ commit b578a90031fd7061fbdaef48b6a66d895ac077c3
author | rnateam |
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date | Fri, 06 Jul 2018 09:01:40 -0400 |
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-1:000000000000 | 0:4b01f0d7b350 |
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1 <?xml version="1.0" encoding="ISO-8859-1"?> | |
2 <!DOCTYPE mixture PUBLIC "-//ghmm.org//DOCUMENT ghmm V1.0//EN" "http://ghmm.sourceforge.net/xml/1.0/ghmm.dtd"> | |
3 <mixture version="1.0" noComponents="1"> | |
4 <HMM name="stateHMM" type="labeled discrete"> | |
5 <alphabet id="0"> | |
6 <symbol code="0">A</symbol> | |
7 <symbol code="1">C</symbol> | |
8 <symbol code="2">G</symbol> | |
9 <symbol code="3">T</symbol> | |
10 <symbol code="4">+</symbol> | |
11 <symbol code="5">#</symbol> | |
12 </alphabet> | |
13 <classAlphabet> | |
14 <symbol code="0">St</symbol> | |
15 <symbol code="1">E1</symbol> | |
16 <symbol code="2">I1</symbol> | |
17 <symbol code="3">S1</symbol> | |
18 <symbol code="4">H1</symbol> | |
19 <symbol code="5">M1</symbol> | |
20 <symbol code="6">E2</symbol> | |
21 <symbol code="7">I2</symbol> | |
22 <symbol code="8">S2</symbol> | |
23 <symbol code="9">H2</symbol> | |
24 <symbol code="10">M2</symbol> | |
25 <symbol code="11">E3</symbol> | |
26 <symbol code="12">I3</symbol> | |
27 <symbol code="13">S3</symbol> | |
28 <symbol code="14">H3</symbol> | |
29 <symbol code="15">M3</symbol> | |
30 <symbol code="16">E4</symbol> | |
31 <symbol code="17">I4</symbol> | |
32 <symbol code="18">S4</symbol> | |
33 <symbol code="19">H4</symbol> | |
34 <symbol code="20">M4</symbol> | |
35 <symbol code="21">E5</symbol> | |
36 <symbol code="22">I5</symbol> | |
37 <symbol code="23">S5</symbol> | |
38 <symbol code="24">H5</symbol> | |
39 <symbol code="25">M5</symbol> | |
40 <symbol code="26">E6</symbol> | |
41 <symbol code="27">I6</symbol> | |
42 <symbol code="28">S6</symbol> | |
43 <symbol code="29">H6</symbol> | |
44 <symbol code="30">M6</symbol> | |
45 <symbol code="31">En</symbol> | |
46 </classAlphabet> | |
47 <state id="0" initial="1.00000000"> | |
48 <discrete id="0">0, 0, 0, 0, 1, 0</discrete> | |
49 <class>0</class> | |
50 </state> | |
51 <state id="1" initial="0.00000000"> | |
52 <discrete id="0">0.4, 0.2, 0.2, 0.2, 0, 0</discrete> | |
53 <class>1</class> | |
54 </state> | |
55 <state id="2" initial="0.00000000"> | |
56 <discrete id="0">0.25, 0.25, 0.25, 0.25, 0, 0</discrete> | |
57 <class>2</class> | |
58 </state> | |
59 <state id="3" initial="0.00000000"> | |
60 <discrete id="0">0.41176471, 0.11764706, 0.35294118, 0.11764706, 0, 0</discrete> | |
61 <class>3</class> | |
62 </state> | |
63 <state id="4" initial="0.00000000"> | |
64 <discrete id="0">0.25, 0.25, 0.25, 0.25, 0, 0</discrete> | |
65 <class>4</class> | |
66 </state> | |
67 <state id="5" initial="0.00000000"> | |
68 <discrete id="0">0.25, 0.25, 0.25, 0.25, 0, 0</discrete> | |
69 <class>5</class> | |
70 </state> | |
71 <state id="6" initial="0.00000000"> | |
72 <discrete id="0">0.4, 0.2, 0.2, 0.2, 0, 0</discrete> | |
73 <class>6</class> | |
74 </state> | |
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77 <class>7</class> | |
78 </state> | |
79 <state id="8" initial="0.00000000"> | |
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81 <class>8</class> | |
82 </state> | |
83 <state id="9" initial="0.00000000"> | |
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114 </state> | |
115 <state id="17" initial="0.00000000"> | |
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119 <state id="18" initial="0.00000000"> | |
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536 <probability>0.071428571</probability> | |
537 </transition> | |
538 <transition source="24" target="27"> | |
539 <probability>0.071428571</probability> | |
540 </transition> | |
541 <transition source="24" target="28"> | |
542 <probability>0.071428571</probability> | |
543 </transition> | |
544 <transition source="24" target="29"> | |
545 <probability>0.71428571</probability> | |
546 </transition> | |
547 <transition source="24" target="30"> | |
548 <probability>0.071428571</probability> | |
549 </transition> | |
550 <transition source="25" target="26"> | |
551 <probability>0.2</probability> | |
552 </transition> | |
553 <transition source="25" target="27"> | |
554 <probability>0.2</probability> | |
555 </transition> | |
556 <transition source="25" target="28"> | |
557 <probability>0.2</probability> | |
558 </transition> | |
559 <transition source="25" target="29"> | |
560 <probability>0.2</probability> | |
561 </transition> | |
562 <transition source="25" target="30"> | |
563 <probability>0.2</probability> | |
564 </transition> | |
565 <transition source="26" target="31"> | |
566 <probability>1</probability> | |
567 </transition> | |
568 <transition source="27" target="31"> | |
569 <probability>1</probability> | |
570 </transition> | |
571 <transition source="28" target="31"> | |
572 <probability>1</probability> | |
573 </transition> | |
574 <transition source="29" target="31"> | |
575 <probability>1</probability> | |
576 </transition> | |
577 <transition source="30" target="31"> | |
578 <probability>1</probability> | |
579 </transition> | |
580 <transition source="31" target="31"> | |
581 <probability>1</probability> | |
582 </transition> | |
583 </HMM> | |
584 </mixture> |