annotate test-data/targetfinder_test_03.txt @ 1:c9d56748fbde draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/targetfinder/ commit fe9dd99a14770b6c5f26e24893599acb577e304f"

No results for Ath-miR395d
query=Ath-miR395b, target=AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:24770419-24771393 REVERSE LENGTH=975, score=6, range=189-209, strand=1

target  5' CUCUCUCUCCAAACGCUUCAC 3'
              ::.:.::::::.::::: 
query   3' CUCAGGGGGGUUUGUGAAGUC 5'

query=Ath-miR393a, target=AT1G09812.1 | Symbols: no symbol available | no full name available | chr1:3187442-3188854 FOR, score=5.5, range=452-474, strand=1

target  5' CGAUGAAUGCGAUCUCAUUUGGG 3'
            ::: :::::::::.: :::::.
query   3' CCUAGUUACGCUAGGG-AAACCU 5'

query=Ath-miR393a, target=AT2G33380.1 | Symbols: AtRD20, PXG3, CLO-3, CLO3, RD20, AtCLO3 | caleosin 3, Arabidopsis thali, score=5.5, range=719-739, strand=1

target  5' AUGGCAAU-CGAUCCUUUUGGA 3'
             . :::: ::::::.::::::
query   3' CCUAGUUACGCUAGGGAAACCU 5'

No results for Ath-miR171a
query=Ath-miR156g, target=AT2G12400.1 | Symbols: no symbol available | no full name available | chr2:5004884-5008442 REV, score=5, range=347-365, strand=1

target  5' GUGUUUACUCUCUUC-GUUU 3'
           :::.:.::::::::: ::. 
query   3' CACGAGUGAGAGAAGACAGC 5'

query=Ath-miR156g, target=AT1G26890.1 | Symbols: no symbol available | no full name available | chr1:9317589-9319246 FOR, score=5, range=948-967, strand=1

target  5' GAGAUCUCUUUCUUCUGUCA 3'
           : : :: ::.::::::::: 
query   3' CACGAGUGAGAGAAGACAGC 5'

query=Ath-miR156g, target=AT1G29025.1 | Symbols: no symbol available | no full name available | chr1:10124286-10127098 R, score=5.5, range=1649-1668, strand=1

target  5' UUGUCUGCUCACUUCUGUCG 3'
            ::. ..::: :::::::::
query   3' CACGAGUGAGAGAAGACAGC 5'

query=Ath-miR156g, target=AT2G17660.1 | Symbols: no symbol available | no full name available | chr2:7673145-7673712 FOR, score=6, range=82-101, strand=1

target  5' CUGUUUUCUCUCUUCUCUCC 3'
            ::.:. ::::::::: :: 
query   3' CACGAGUGAGAGAAGACAGC 5'

query=Ath-miR156g, target=AT1G22470.1 | Symbols: no symbol available | no full name available | chr1:7932777-7933604 REV, score=6, range=570-590, strand=1

target  5' CUUCUUAUUACUCUUCUGUCU 3'
            : ::.:.: :::::::::: 
query   3' CACGAGUGA-GAGAAGACAGC 5'

query=Ath-miR156g, target=AT1G11960.1 | Symbols: no symbol available | no full name available | chr1:4039566-4044021 REV, score=6, range=1472-1490, strand=1

target  5' UUCCUCACUUUCUUCU-UCA 3'
            : ::::::.:::::: :: 
query   3' CACGAGUGAGAGAAGACAGC 5'

query=Ath-miR395c, target=AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:24770419-24771393 REVERSE LENGTH=975, score=6, range=189-209, strand=1

target  5' CUCUCUCUCCAAACGCUUCAC 3'
              ::.:.::::::.::::: 
query   3' CUCAGGGGGGUUUGUGAAGUC 5'

query=Ath-miRN134, target=AT1G60030.1 | Symbols: NAT7, ATNAT7 | nucleobase-ascorbate transporter 7, ARABIDOPSIS NUCLEOBA, score=5, range=1655-1675, strand=1

target  5' AGAACAAAAUUCAUCCUCGGA 3'
           ::: : :::::::::: :.::
query   3' UCUAGGUUUAAGUAGG-GUCU 5'

query=Ath-miRN134, target=AT1G30280.1 | Symbols: no symbol available | no full name available | chr1:10662621-10664668 R, score=6, range=761-779, strand=1

target  5' GGAUCCGAAUUCCUUC-AGA 3'
           .:::::.::::: :.: :::
query   3' UCUAGGUUUAAGUAGGGUCU 5'

query=Ath-miRN134, target=AT1G73010.1 | Symbols: PS2, ATPS2, AtPPsPase1, PPsPase1 | pyrophosphate-specific phosphatase1,, score=6, range=1149-1167, strand=1

target  5' AGAUU-GAAUUUAUCCUAAA 3'
           ::::. .::::.::::.: :
query   3' UCUAGGUUUAAGUAGGGUCU 5'

query=Ath-miR170, target=AT1G26770.2 | Symbols: ATHEXP ALPHA 1.1, ATEXPA10, AT-EXP10, EXPA10, ATEXP10, EXP10 | expansin, score=5.5, range=321-341, strand=1

target  5' GGUGUUUACCUGGCUCAAUCG 3'
           :.:.:: :: .:::::::::.
query   3' CUAUAACUGUGCCGAGUUAGU 5'

query=Ath-miR170, target=AT1G10340.1 | Symbols: no symbol available | no full name available | chr1:3390475-3392633 REV, score=6, range=716-736, strand=1

target  5' UAUAUUGUUAGGGCUCGAUCA 3'
            :::::: .: :::::.::::
query   3' CUAUAACUGUGCCGAGUUAGU 5'

query=Ath-miR861, target=AT2G41190.1 | Symbols: no symbol available | no full name available | chr2:17167279-17170559 R, score=5.5, range=1974-1994, strand=1

target  5' GACCUUGGGGACAUAUUCUUC 3'
           : :::::..:::::::.: ::
query   3' CAGGAACUUCUGUAUAGGUAG 5'

query=Ath-miRN132, target=AT1G56660.1 | Symbols: no symbol available | no full name available | chr1:21237839-21241014 F, score=5, range=477-497, strand=1

target  5' AGAGAAGAAACACGAGGAGUU 3'
           :: :: : :::::::::: ::
query   3' UCGCUACGUUGUGCUCCUGAA 5'

query=Ath-miR156c, target=AT1G26890.1 | Symbols: no symbol available | no full name available | chr1:9317589-9319246 FOR, score=4, range=948-967, strand=1

target  5' GAGAUCUCUUUCUUCUGUCA 3'
           : : :: ::.::::::::::
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156c, target=AT2G12400.1 | Symbols: no symbol available | no full name available | chr2:5004884-5008442 REV, score=5, range=347-365, strand=1

target  5' GUGUUUACUCUCUUC-GUUU 3'
           :::.:.::::::::: ::. 
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156c, target=AT1G11960.1 | Symbols: no symbol available | no full name available | chr1:4039566-4044021 REV, score=5, range=1472-1490, strand=1

target  5' UUCCUCACUUUCUUCU-UCA 3'
            : ::::::.:::::: :::
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156c, target=AT1G29025.1 | Symbols: no symbol available | no full name available | chr1:10124286-10127098 R, score=6, range=1649-1668, strand=1

target  5' UUGUCUGCUCACUUCUGUCG 3'
            ::. ..::: ::::::::.
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156c, target=AT2G17660.1 | Symbols: no symbol available | no full name available | chr2:7673145-7673712 FOR, score=6, range=82-101, strand=1

target  5' CUGUUUUCUCUCUUCUCUCC 3'
            ::.:. ::::::::: :: 
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156c, target=AT1G22470.1 | Symbols: no symbol available | no full name available | chr1:7932777-7933604 REV, score=6, range=570-590, strand=1

target  5' CUUCUUAUUACUCUUCUGUCU 3'
            : ::.:.: :::::::::: 
query   3' CACGAGUGA-GAGAAGACAGU 5'

query=Ath-miR156c, target=AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441828-18443405 REVERSE LENGTH=1169, score=6, range=68-88, strand=1

target  5' UUUUUCUUUCUCUCUCUGUCA 3'
            : .:: .::::: :::::::
query   3' CACGAGUGAGAGA-AGACAGU 5'

query=Ath-miR156e, target=AT1G26890.1 | Symbols: no symbol available | no full name available | chr1:9317589-9319246 FOR, score=4, range=948-967, strand=1

target  5' GAGAUCUCUUUCUUCUGUCA 3'
           : : :: ::.::::::::::
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156e, target=AT2G12400.1 | Symbols: no symbol available | no full name available | chr2:5004884-5008442 REV, score=5, range=347-365, strand=1

target  5' GUGUUUACUCUCUUC-GUUU 3'
           :::.:.::::::::: ::. 
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156e, target=AT1G11960.1 | Symbols: no symbol available | no full name available | chr1:4039566-4044021 REV, score=5, range=1472-1490, strand=1

target  5' UUCCUCACUUUCUUCU-UCA 3'
            : ::::::.:::::: :::
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156e, target=AT1G29025.1 | Symbols: no symbol available | no full name available | chr1:10124286-10127098 R, score=6, range=1649-1668, strand=1

target  5' UUGUCUGCUCACUUCUGUCG 3'
            ::. ..::: ::::::::.
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156e, target=AT2G17660.1 | Symbols: no symbol available | no full name available | chr2:7673145-7673712 FOR, score=6, range=82-101, strand=1

target  5' CUGUUUUCUCUCUUCUCUCC 3'
            ::.:. ::::::::: :: 
query   3' CACGAGUGAGAGAAGACAGU 5'

query=Ath-miR156e, target=AT1G22470.1 | Symbols: no symbol available | no full name available | chr1:7932777-7933604 REV, score=6, range=570-590, strand=1

target  5' CUUCUUAUUACUCUUCUGUCU 3'
            : ::.:.: :::::::::: 
query   3' CACGAGUGA-GAGAAGACAGU 5'

query=Ath-miR156e, target=AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441828-18443405 REVERSE LENGTH=1169, score=6, range=68-88, strand=1

target  5' UUUUUCUUUCUCUCUCUGUCA 3'
            : .:: .::::: :::::::
query   3' CACGAGUGAGAGA-AGACAGU 5'

No results for Ath-miR395a
No results for Ath-miR165b
No results for Ath-miR2111a
query=Ath-miR171c, target=AT2G32800.1 | Symbols: LecRK-S.2, AP4.3A | L-type lectin receptor kinase S.2 | chr2:13916440-1, score=6, range=1659-1679, strand=1

target  5' GUUGAUUUUGGUACGGCUUAU 3'
             :::: ::::.::::::.: 
query   3' GCACUAUAACCGUGCCGAGUU 5'

query=Ath-miR393b, target=AT1G09812.1 | Symbols: no symbol available | no full name available | chr1:3187442-3188854 FOR, score=4.5, range=453-474, strand=1

target  5' GAUGAAUGCGAUCUCAUUUGGG 3'
           ::: :::::::::.: :::::.
query   3' CUAGUUACGCUAGGG-AAACCU 5'

query=Ath-miR393b, target=AT2G33380.1 | Symbols: AtRD20, PXG3, CLO-3, CLO3, RD20, AtCLO3 | caleosin 3, Arabidopsis thali, score=4.5, range=720-739, strand=1

target  5' UGGCAAU-CGAUCCUUUUGGA 3'
            . :::: ::::::.::::::
query   3' CUAGUUACGCUAGGGAAACCU 5'

query=Ath-miR393b, target=AT1G20070.1 | Symbols: no symbol available | no full name available | chr1:6958010-6959148 REV, score=5, range=72-91, strand=1

target  5' UAUCAAAACGAUCC-UUUGGA 3'
            :::::  :::::: ::::::
query   3' CUAGUUACGCUAGGGAAACCU 5'

query=Ath-miR393b, target=AT1G63300.1 | Symbols: no symbol available | no full name available | chr1:23481907-23486220 F, score=6, range=1397-1416, strand=1

target  5' GAUCCAUG-GGUUCUUUUGGA 3'
           :::: ::: :.:.:.::::::
query   3' CUAGUUACGCUAGGGAAACCU 5'

No results for Ath-miR829
No results for Ath-miR2111b
query=Ath-miRN146, target=AT1G62620.1 | Symbols: no symbol available | no full name available | chr1:23182644-23185151 F, score=6, range=242-263, strand=1

target  5' CAUUCAAGCGUCUAUAGAUCUC 3'
            :::: :: :::::::.:.:.:
query   3' CUAAGCUC-CAGAUAUUUGGGG 5'

No results for Ath-miR165a
No results for Ath-miR168a
query=Ath-miRN118, target=AT1G78720.1 | Symbols: no symbol available | no full name available | chr1:29605457-29607678 F, score=5.5, range=523-542, strand=1

target  5' GCUAUUCUUAUCAUAGUUCA 3'
           ::.: : :.::::.::.:::
query   3' CGGUUAAAGUAGUGUCGAGU 5'

query=Ath-miRN118, target=AT1G01200.1 | Symbols: RABA3, ATRABA3, ATRAB-A3 | ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPas, score=6, range=484-503, strand=1

target  5' GGCAAACUCGUCAAAGCUCA 3'
           : :::  ::.::: ::::::
query   3' CGGUUAAAGUAGUGUCGAGU 5'

query=Ath-miR395f, target=AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:24770419-24771393 REVERSE LENGTH=975, score=6, range=189-209, strand=1

target  5' CUCUCUCUCCAAACGCUUCAC 3'
              ::.:.::::::.::::: 
query   3' CUCAGGGGGGUUUGUGAAGUC 5'

No results for Ath-miR851
No results for Ath-miR395e
No results for Ath-miRN143