Mercurial > repos > rnateam > targetfinder

comparison test-data/targetfinder_test_03.txt @ 1:c9d56748fbde draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/targetfinder/ commit fe9dd99a14770b6c5f26e24893599acb577e304f"
author rnateam
date Thu, 25 Mar 2021 19:53:15 +0000
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0:773fdd1a02ea 1:c9d56748fbde
1 No results for Ath-miR395d
2 query=Ath-miR395b, target=AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:24770419-24771393 REVERSE LENGTH=975, score=6, range=189-209, strand=1
3
4 target 5' CUCUCUCUCCAAACGCUUCAC 3'
5 ::.:.::::::.:::::
6 query 3' CUCAGGGGGGUUUGUGAAGUC 5'
7
8 query=Ath-miR393a, target=AT1G09812.1 | Symbols: no symbol available | no full name available | chr1:3187442-3188854 FOR, score=5.5, range=452-474, strand=1
9
10 target 5' CGAUGAAUGCGAUCUCAUUUGGG 3'
11 ::: :::::::::.: :::::.
12 query 3' CCUAGUUACGCUAGGG-AAACCU 5'
13
14 query=Ath-miR393a, target=AT2G33380.1 | Symbols: AtRD20, PXG3, CLO-3, CLO3, RD20, AtCLO3 | caleosin 3, Arabidopsis thali, score=5.5, range=719-739, strand=1
15
16 target 5' AUGGCAAU-CGAUCCUUUUGGA 3'
17 . :::: ::::::.::::::
18 query 3' CCUAGUUACGCUAGGGAAACCU 5'
19
20 No results for Ath-miR171a
21 query=Ath-miR156g, target=AT2G12400.1 | Symbols: no symbol available | no full name available | chr2:5004884-5008442 REV, score=5, range=347-365, strand=1
22
23 target 5' GUGUUUACUCUCUUC-GUUU 3'
24 :::.:.::::::::: ::.
25 query 3' CACGAGUGAGAGAAGACAGC 5'
26
27 query=Ath-miR156g, target=AT1G26890.1 | Symbols: no symbol available | no full name available | chr1:9317589-9319246 FOR, score=5, range=948-967, strand=1
28
29 target 5' GAGAUCUCUUUCUUCUGUCA 3'
30 : : :: ::.:::::::::
31 query 3' CACGAGUGAGAGAAGACAGC 5'
32
33 query=Ath-miR156g, target=AT1G29025.1 | Symbols: no symbol available | no full name available | chr1:10124286-10127098 R, score=5.5, range=1649-1668, strand=1
34
35 target 5' UUGUCUGCUCACUUCUGUCG 3'
36 ::. ..::: :::::::::
37 query 3' CACGAGUGAGAGAAGACAGC 5'
38
39 query=Ath-miR156g, target=AT2G17660.1 | Symbols: no symbol available | no full name available | chr2:7673145-7673712 FOR, score=6, range=82-101, strand=1
40
41 target 5' CUGUUUUCUCUCUUCUCUCC 3'
42 ::.:. ::::::::: ::
43 query 3' CACGAGUGAGAGAAGACAGC 5'
44
45 query=Ath-miR156g, target=AT1G22470.1 | Symbols: no symbol available | no full name available | chr1:7932777-7933604 REV, score=6, range=570-590, strand=1
46
47 target 5' CUUCUUAUUACUCUUCUGUCU 3'
48 : ::.:.: ::::::::::
49 query 3' CACGAGUGA-GAGAAGACAGC 5'
50
51 query=Ath-miR156g, target=AT1G11960.1 | Symbols: no symbol available | no full name available | chr1:4039566-4044021 REV, score=6, range=1472-1490, strand=1
52
53 target 5' UUCCUCACUUUCUUCU-UCA 3'
54 : ::::::.:::::: ::
55 query 3' CACGAGUGAGAGAAGACAGC 5'
56
57 query=Ath-miR395c, target=AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:24770419-24771393 REVERSE LENGTH=975, score=6, range=189-209, strand=1
58
59 target 5' CUCUCUCUCCAAACGCUUCAC 3'
60 ::.:.::::::.:::::
61 query 3' CUCAGGGGGGUUUGUGAAGUC 5'
62
63 query=Ath-miRN134, target=AT1G60030.1 | Symbols: NAT7, ATNAT7 | nucleobase-ascorbate transporter 7, ARABIDOPSIS NUCLEOBA, score=5, range=1655-1675, strand=1
64
65 target 5' AGAACAAAAUUCAUCCUCGGA 3'
66 ::: : :::::::::: :.::
67 query 3' UCUAGGUUUAAGUAGG-GUCU 5'
68
69 query=Ath-miRN134, target=AT1G30280.1 | Symbols: no symbol available | no full name available | chr1:10662621-10664668 R, score=6, range=761-779, strand=1
70
71 target 5' GGAUCCGAAUUCCUUC-AGA 3'
72 .:::::.::::: :.: :::
73 query 3' UCUAGGUUUAAGUAGGGUCU 5'
74
75 query=Ath-miRN134, target=AT1G73010.1 | Symbols: PS2, ATPS2, AtPPsPase1, PPsPase1 | pyrophosphate-specific phosphatase1,, score=6, range=1149-1167, strand=1
76
77 target 5' AGAUU-GAAUUUAUCCUAAA 3'
78 ::::. .::::.::::.: :
79 query 3' UCUAGGUUUAAGUAGGGUCU 5'
80
81 query=Ath-miR170, target=AT1G26770.2 | Symbols: ATHEXP ALPHA 1.1, ATEXPA10, AT-EXP10, EXPA10, ATEXP10, EXP10 | expansin, score=5.5, range=321-341, strand=1
82
83 target 5' GGUGUUUACCUGGCUCAAUCG 3'
84 :.:.:: :: .:::::::::.
85 query 3' CUAUAACUGUGCCGAGUUAGU 5'
86
87 query=Ath-miR170, target=AT1G10340.1 | Symbols: no symbol available | no full name available | chr1:3390475-3392633 REV, score=6, range=716-736, strand=1
88
89 target 5' UAUAUUGUUAGGGCUCGAUCA 3'
90 :::::: .: :::::.::::
91 query 3' CUAUAACUGUGCCGAGUUAGU 5'
92
93 query=Ath-miR861, target=AT2G41190.1 | Symbols: no symbol available | no full name available | chr2:17167279-17170559 R, score=5.5, range=1974-1994, strand=1
94
95 target 5' GACCUUGGGGACAUAUUCUUC 3'
96 : :::::..:::::::.: ::
97 query 3' CAGGAACUUCUGUAUAGGUAG 5'
98
99 query=Ath-miRN132, target=AT1G56660.1 | Symbols: no symbol available | no full name available | chr1:21237839-21241014 F, score=5, range=477-497, strand=1
100
101 target 5' AGAGAAGAAACACGAGGAGUU 3'
102 :: :: : :::::::::: ::
103 query 3' UCGCUACGUUGUGCUCCUGAA 5'
104
105 query=Ath-miR156c, target=AT1G26890.1 | Symbols: no symbol available | no full name available | chr1:9317589-9319246 FOR, score=4, range=948-967, strand=1
106
107 target 5' GAGAUCUCUUUCUUCUGUCA 3'
108 : : :: ::.::::::::::
109 query 3' CACGAGUGAGAGAAGACAGU 5'
110
111 query=Ath-miR156c, target=AT2G12400.1 | Symbols: no symbol available | no full name available | chr2:5004884-5008442 REV, score=5, range=347-365, strand=1
112
113 target 5' GUGUUUACUCUCUUC-GUUU 3'
114 :::.:.::::::::: ::.
115 query 3' CACGAGUGAGAGAAGACAGU 5'
116
117 query=Ath-miR156c, target=AT1G11960.1 | Symbols: no symbol available | no full name available | chr1:4039566-4044021 REV, score=5, range=1472-1490, strand=1
118
119 target 5' UUCCUCACUUUCUUCU-UCA 3'
120 : ::::::.:::::: :::
121 query 3' CACGAGUGAGAGAAGACAGU 5'
122
123 query=Ath-miR156c, target=AT1G29025.1 | Symbols: no symbol available | no full name available | chr1:10124286-10127098 R, score=6, range=1649-1668, strand=1
124
125 target 5' UUGUCUGCUCACUUCUGUCG 3'
126 ::. ..::: ::::::::.
127 query 3' CACGAGUGAGAGAAGACAGU 5'
128
129 query=Ath-miR156c, target=AT2G17660.1 | Symbols: no symbol available | no full name available | chr2:7673145-7673712 FOR, score=6, range=82-101, strand=1
130
131 target 5' CUGUUUUCUCUCUUCUCUCC 3'
132 ::.:. ::::::::: ::
133 query 3' CACGAGUGAGAGAAGACAGU 5'
134
135 query=Ath-miR156c, target=AT1G22470.1 | Symbols: no symbol available | no full name available | chr1:7932777-7933604 REV, score=6, range=570-590, strand=1
136
137 target 5' CUUCUUAUUACUCUUCUGUCU 3'
138 : ::.:.: ::::::::::
139 query 3' CACGAGUGA-GAGAAGACAGU 5'
140
141 query=Ath-miR156c, target=AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441828-18443405 REVERSE LENGTH=1169, score=6, range=68-88, strand=1
142
143 target 5' UUUUUCUUUCUCUCUCUGUCA 3'
144 : .:: .::::: :::::::
145 query 3' CACGAGUGAGAGA-AGACAGU 5'
146
147 query=Ath-miR156e, target=AT1G26890.1 | Symbols: no symbol available | no full name available | chr1:9317589-9319246 FOR, score=4, range=948-967, strand=1
148
149 target 5' GAGAUCUCUUUCUUCUGUCA 3'
150 : : :: ::.::::::::::
151 query 3' CACGAGUGAGAGAAGACAGU 5'
152
153 query=Ath-miR156e, target=AT2G12400.1 | Symbols: no symbol available | no full name available | chr2:5004884-5008442 REV, score=5, range=347-365, strand=1
154
155 target 5' GUGUUUACUCUCUUC-GUUU 3'
156 :::.:.::::::::: ::.
157 query 3' CACGAGUGAGAGAAGACAGU 5'
158
159 query=Ath-miR156e, target=AT1G11960.1 | Symbols: no symbol available | no full name available | chr1:4039566-4044021 REV, score=5, range=1472-1490, strand=1
160
161 target 5' UUCCUCACUUUCUUCU-UCA 3'
162 : ::::::.:::::: :::
163 query 3' CACGAGUGAGAGAAGACAGU 5'
164
165 query=Ath-miR156e, target=AT1G29025.1 | Symbols: no symbol available | no full name available | chr1:10124286-10127098 R, score=6, range=1649-1668, strand=1
166
167 target 5' UUGUCUGCUCACUUCUGUCG 3'
168 ::. ..::: ::::::::.
169 query 3' CACGAGUGAGAGAAGACAGU 5'
170
171 query=Ath-miR156e, target=AT2G17660.1 | Symbols: no symbol available | no full name available | chr2:7673145-7673712 FOR, score=6, range=82-101, strand=1
172
173 target 5' CUGUUUUCUCUCUUCUCUCC 3'
174 ::.:. ::::::::: ::
175 query 3' CACGAGUGAGAGAAGACAGU 5'
176
177 query=Ath-miR156e, target=AT1G22470.1 | Symbols: no symbol available | no full name available | chr1:7932777-7933604 REV, score=6, range=570-590, strand=1
178
179 target 5' CUUCUUAUUACUCUUCUGUCU 3'
180 : ::.:.: ::::::::::
181 query 3' CACGAGUGA-GAGAAGACAGU 5'
182
183 query=Ath-miR156e, target=AT2G44740.1 | Symbols: CYCP4;1 | cyclin p4;1 | chr2:18441828-18443405 REVERSE LENGTH=1169, score=6, range=68-88, strand=1
184
185 target 5' UUUUUCUUUCUCUCUCUGUCA 3'
186 : .:: .::::: :::::::
187 query 3' CACGAGUGAGAGA-AGACAGU 5'
188
189 No results for Ath-miR395a
190 No results for Ath-miR165b
191 No results for Ath-miR2111a
192 query=Ath-miR171c, target=AT2G32800.1 | Symbols: LecRK-S.2, AP4.3A | L-type lectin receptor kinase S.2 | chr2:13916440-1, score=6, range=1659-1679, strand=1
193
194 target 5' GUUGAUUUUGGUACGGCUUAU 3'
195 :::: ::::.::::::.:
196 query 3' GCACUAUAACCGUGCCGAGUU 5'
197
198 query=Ath-miR393b, target=AT1G09812.1 | Symbols: no symbol available | no full name available | chr1:3187442-3188854 FOR, score=4.5, range=453-474, strand=1
199
200 target 5' GAUGAAUGCGAUCUCAUUUGGG 3'
201 ::: :::::::::.: :::::.
202 query 3' CUAGUUACGCUAGGG-AAACCU 5'
203
204 query=Ath-miR393b, target=AT2G33380.1 | Symbols: AtRD20, PXG3, CLO-3, CLO3, RD20, AtCLO3 | caleosin 3, Arabidopsis thali, score=4.5, range=720-739, strand=1
205
206 target 5' UGGCAAU-CGAUCCUUUUGGA 3'
207 . :::: ::::::.::::::
208 query 3' CUAGUUACGCUAGGGAAACCU 5'
209
210 query=Ath-miR393b, target=AT1G20070.1 | Symbols: no symbol available | no full name available | chr1:6958010-6959148 REV, score=5, range=72-91, strand=1
211
212 target 5' UAUCAAAACGAUCC-UUUGGA 3'
213 ::::: :::::: ::::::
214 query 3' CUAGUUACGCUAGGGAAACCU 5'
215
216 query=Ath-miR393b, target=AT1G63300.1 | Symbols: no symbol available | no full name available | chr1:23481907-23486220 F, score=6, range=1397-1416, strand=1
217
218 target 5' GAUCCAUG-GGUUCUUUUGGA 3'
219 :::: ::: :.:.:.::::::
220 query 3' CUAGUUACGCUAGGGAAACCU 5'
221
222 No results for Ath-miR829
223 No results for Ath-miR2111b
224 query=Ath-miRN146, target=AT1G62620.1 | Symbols: no symbol available | no full name available | chr1:23182644-23185151 F, score=6, range=242-263, strand=1
225
226 target 5' CAUUCAAGCGUCUAUAGAUCUC 3'
227 :::: :: :::::::.:.:.:
228 query 3' CUAAGCUC-CAGAUAUUUGGGG 5'
229
230 No results for Ath-miR165a
231 No results for Ath-miR168a
232 query=Ath-miRN118, target=AT1G78720.1 | Symbols: no symbol available | no full name available | chr1:29605457-29607678 F, score=5.5, range=523-542, strand=1
233
234 target 5' GCUAUUCUUAUCAUAGUUCA 3'
235 ::.: : :.::::.::.:::
236 query 3' CGGUUAAAGUAGUGUCGAGU 5'
237
238 query=Ath-miRN118, target=AT1G01200.1 | Symbols: RABA3, ATRABA3, ATRAB-A3 | ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPas, score=6, range=484-503, strand=1
239
240 target 5' GGCAAACUCGUCAAAGCUCA 3'
241 : ::: ::.::: ::::::
242 query 3' CGGUUAAAGUAGUGUCGAGU 5'
243
244 query=Ath-miR395f, target=AT1G66400.1 | Symbols: CML23 | calmodulin like 23 | chr1:24770419-24771393 REVERSE LENGTH=975, score=6, range=189-209, strand=1
245
246 target 5' CUCUCUCUCCAAACGCUUCAC 3'
247 ::.:.::::::.:::::
248 query 3' CUCAGGGGGGUUUGUGAAGUC 5'
249
250 No results for Ath-miR851
251 No results for Ath-miR395e
252 No results for Ath-miRN143