Mercurial > repos > rnateam > vienna_rna

comparison rnalalifold.xml @ 2:5e58cbf27a05 draft

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author rnateam
date Mon, 09 Feb 2015 13:26:11 -0500
parents 78d673470d45
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1:ec0fdb8c4ebb 2:5e58cbf27a05
22 $advancedOptions.notetra 22 $advancedOptions.notetra
23 --cfactor=$advancedOptions.cfactor 23 --cfactor=$advancedOptions.cfactor
24 --nfactor=$advancedOptions.nfactor 24 --nfactor=$advancedOptions.nfactor
25 $advancedOptions.ribosum 25 $advancedOptions.ribosum
26 #end if 26 #end if
27 <!--; tar -cf $imagesFile *.ps -->
28 ]]> 27 ]]>
29 </command> 28 </command>
30 29
31 <inputs> 30 <inputs>
32 <param format="clustal" name="input" type="data" label="Clustal file"/> 31 <param format="clustal" name="input" type="data" label="Clustal file"/>
66 <data format="txt" name="output" /> 65 <data format="txt" name="output" />
67 <!-- the program does not seem to generate a dot plot, even though that is implied in the help --> 66 <!-- the program does not seem to generate a dot plot, even though that is implied in the help -->
68 <!--<data format="tar" name="imagesFile" label="RNALalifold images"/>--> 67 <!--<data format="tar" name="imagesFile" label="RNALalifold images"/>-->
69 </outputs> 68 </outputs>
70 <tests> 69 <tests>
70 <test>
71 <param name="input" value="rnalalifold_input1.clustal"/>
72 <output name="output" file="rnalalifold_result1.txt"/>
73 </test>
71 </tests> 74 </tests>
72 <help> 75 <help>
73 <![CDATA[ 76 <![CDATA[
74 77
75 **RNALalifold** 78 **RNALalifold**