Mercurial > repos > rnateam > vienna_rna
comparison rnasnoop.xml @ 2:5e58cbf27a05 draft
Uploaded
| author | rnateam |
|---|---|
| date | Mon, 09 Feb 2015 13:26:11 -0500 |
| parents | 78d673470d45 |
| children |
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| 1:ec0fdb8c4ebb | 2:5e58cbf27a05 |
|---|---|
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 10 <command> | 10 <command> |
| 11 <![CDATA[ | 11 <![CDATA[ |
| 12 RNAsnoop --query=$input1 --target=$input2 > $output | 12 RNAsnoop --query=$input1 --target=$input2 > $output |
| 13 --alignmentLenght=$length | 13 --alignmentLength=$length |
| 14 $constraint | 14 $constraint |
| 15 --energy-threshold=$energyThreshold | 15 --energy-threshold=$energyThreshold |
| 16 #if $varExists('$advancedOptions.extensioncost') | 16 #if $varExists('$advancedOptions.extensioncost') |
| 17 $advancedOptions.fast | 17 $advancedOptions.fast |
| 18 --extension-cost=$advancedOptions.extensioncost | 18 --extension-cost=$advancedOptions.extensioncost |
| 97 <filter>filetypeOptions['filetypeSelector'] == "fasta"</filter> | 97 <filter>filetypeOptions['filetypeSelector'] == "fasta"</filter> |
| 98 </data> | 98 </data> |
| 99 | 99 |
| 100 </outputs> | 100 </outputs> |
| 101 <tests> | 101 <tests> |
| 102 <test> | |
| 103 <param name="input1" value="rnasnoop_input1b.fa"/> | |
| 104 <param name="input2" value="rnasnoop_input1a.fa"/> | |
| 105 <output name="output" file="rnasnoop_result1.txt"/> | |
| 106 </test> | |
| 102 </tests> | 107 </tests> |
| 103 <help> | 108 <help> |
| 104 <![CDATA[ | 109 <![CDATA[ |
| 105 | 110 |
| 106 **RNAsnoop** | 111 **RNAsnoop** |