Mercurial > repos > rnateam > vienna_rna
comparison rnasnoop.xml @ 2:5e58cbf27a05 draft
Uploaded
author | rnateam |
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date | Mon, 09 Feb 2015 13:26:11 -0500 |
parents | 78d673470d45 |
children |
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1:ec0fdb8c4ebb | 2:5e58cbf27a05 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <command> | 10 <command> |
11 <![CDATA[ | 11 <![CDATA[ |
12 RNAsnoop --query=$input1 --target=$input2 > $output | 12 RNAsnoop --query=$input1 --target=$input2 > $output |
13 --alignmentLenght=$length | 13 --alignmentLength=$length |
14 $constraint | 14 $constraint |
15 --energy-threshold=$energyThreshold | 15 --energy-threshold=$energyThreshold |
16 #if $varExists('$advancedOptions.extensioncost') | 16 #if $varExists('$advancedOptions.extensioncost') |
17 $advancedOptions.fast | 17 $advancedOptions.fast |
18 --extension-cost=$advancedOptions.extensioncost | 18 --extension-cost=$advancedOptions.extensioncost |
97 <filter>filetypeOptions['filetypeSelector'] == "fasta"</filter> | 97 <filter>filetypeOptions['filetypeSelector'] == "fasta"</filter> |
98 </data> | 98 </data> |
99 | 99 |
100 </outputs> | 100 </outputs> |
101 <tests> | 101 <tests> |
102 <test> | |
103 <param name="input1" value="rnasnoop_input1b.fa"/> | |
104 <param name="input2" value="rnasnoop_input1a.fa"/> | |
105 <output name="output" file="rnasnoop_result1.txt"/> | |
106 </test> | |
102 </tests> | 107 </tests> |
103 <help> | 108 <help> |
104 <![CDATA[ | 109 <![CDATA[ |
105 | 110 |
106 **RNAsnoop** | 111 **RNAsnoop** |