Mercurial > repos > rnateam > viennarna_rnaalifold
diff test-data/Anolis_caro_chrUn_GL343207.trna3_AlaAGC_dp.ps @ 7:b63684e40386 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29
author | rnateam |
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date | Wed, 20 Dec 2017 08:29:54 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Anolis_caro_chrUn_GL343207.trna3_AlaAGC_dp.ps Wed Dec 20 08:29:54 2017 -0500 @@ -0,0 +1,370 @@ +%!PS-Adobe-3.0 EPSF-3.0 +%%Title: RNA Dot Plot +%%Creator: ViennaRNA-2.2.10 +%%CreationDate: Tue Dec 19 19:42:58 2017 +%%BoundingBox: 66 211 518 662 +%%DocumentFonts: Helvetica +%%Pages: 1 +%%EndComments + +%Options: +% +%This file contains the square roots of the base pair probabilities in the form +% i j sqrt(p(i,j)) ubox + +%%BeginProlog +/DPdict 100 dict def +DPdict begin +/logscale false def +/lpmin 1e-05 log def + +/box { %size x y box - draws box centered on x,y + 2 index 0.5 mul sub % x -= 0.5 + exch 2 index 0.5 mul sub exch % y -= 0.5 + 3 -1 roll dup rectfill +} bind def + +/ubox { + logscale { + log dup add lpmin div 1 exch sub dup 0 lt { pop 0 } if + } if + 3 1 roll + exch len exch sub 1 add box +} bind def + +/lbox { + 3 1 roll + len exch sub 1 add box +} bind def + +/drawseq { +% print sequence along all 4 sides +[ [0.7 -0.3 0 ] + [0.7 0.7 len add 0] + [-0.3 len sub -0.4 -90] + [-0.3 len sub 0.7 len add -90] +] { + gsave + aload pop rotate translate + 0 1 len 1 sub { + dup 0 moveto + sequence exch 1 getinterval + show + } for + grestore + } forall +} bind def + +/drawgrid{ + 0.01 setlinewidth + len log 0.9 sub cvi 10 exch exp % grid spacing + dup 1 gt { + dup dup 20 div dup 2 array astore exch 40 div setdash + } { [0.3 0.7] 0.1 setdash } ifelse + 0 exch len { + dup dup + 0 moveto + len lineto + dup + len exch sub 0 exch moveto + len exch len exch sub lineto + stroke + } for + [] 0 setdash + 0.04 setlinewidth + currentdict /cutpoint known { + cutpoint 1 sub + dup dup -1 moveto len 1 add lineto + len exch sub dup + -1 exch moveto len 1 add exch lineto + stroke + } if + 0.5 neg dup translate +} bind def + +end +%%EndProlog +DPdict begin +%delete next line to get rid of title +270 665 moveto /Helvetica findfont 14 scalefont setfont (Anolis_caro_chrUn_GL343207.trna3_AlaAGC) show + +/sequence { (\ +GGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUUGAUGCCCGCAUUCUCCA\ +) } def +/len { sequence length } bind def + +72 216 translate +72 6 mul len 1 add div dup scale +/Helvetica findfont 0.95 scalefont setfont + +drawseq +0.5 dup translate +% draw diagonal +0.04 setlinewidth +0 len moveto len 0 lineto stroke + +/min { 2 copy gt { exch } if pop } bind def + +/utri{ % i j prob utri + gsave + 1 min 2 div + 0.85 mul 0.15 add 0.95 0.33 + 3 1 roll % prepare hsb color + sethsbcolor + % now produce the coordinates for lines + exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub + moveto lineto lineto closepath fill + grestore +} bind def +/uHmotif{ % i j uHmotif + gsave + 1 min 2 div + 0.85 mul 0.15 add 0.95 0.99 + 3 1 roll % prepare hsb color + sethsbcolor + % now produce the coordinates for lines + exch 1 sub dup len exch sub dup 4 -1 roll dup 3 1 roll dup len exch sub + moveto lineto lineto closepath fill + grestore +} bind def +/lHmotif{ % i j lHmotif + gsave + 1 min 2 div + 0.85 mul 0.15 add 0.95 0.99 + 3 1 roll % prepare hsb color + sethsbcolor + % now produce the coordinates for lines + dup len exch sub dup 4 -1 roll 1 sub dup 3 1 roll dup len exch sub + moveto lineto lineto closepath fill + grestore +} bind def +/uImotif{ % i j k l uImotif + gsave + 1 min 2 div + 0.85 mul 0.15 add 0.95 0.99 + 3 1 roll % prepare hsb color + sethsbcolor + % now produce the coordinates for lines + 1 sub dup 5 1 roll exch len exch sub dup 5 1 roll 3 -1 roll dup + 5 1 roll exch 4 1 roll 3 1 roll exch 1 sub len exch sub dup 3 1 roll + moveto lineto lineto lineto closepath fill + grestore +} bind def +/lImotif{ % i j k l lImotif + gsave + 1 min 2 div + 0.85 mul 0.15 add 0.95 0.99 + 3 1 roll % prepare hsb color + sethsbcolor + % now produce the coordinates for lines + 4 -1 roll 1 sub dup 5 1 roll exch 1 sub len exch sub dup 3 -1 roll exch + 5 -1 roll len exch sub dup 6 -1 roll dup 3 1 roll 7 4 roll + moveto lineto lineto lineto closepath fill + grestore +} bind def + +%data starts here + +%start of quadruplex data + +%start of Hmotif data + +%start of Imotif data + +%draw the grid +drawgrid + +%start of base pair probability data +1 71 0.011137621 ubox +1 72 0.998618513 ubox +2 70 0.011249479 ubox +2 71 0.999343269 ubox +2 72 0.029380302 ubox +3 69 0.016278852 ubox +3 70 0.998657995 ubox +3 71 0.029349731 ubox +3 72 0.013044031 ubox +4 68 0.015570075 ubox +4 69 0.999660285 ubox +4 70 0.006500567 ubox +4 71 0.013063530 ubox +5 67 0.017184802 ubox +5 68 0.995393993 ubox +5 70 0.012116272 ubox +6 20 0.003683136 ubox +6 47 0.007871866 ubox +6 67 0.961997835 ubox +6 68 0.010641824 ubox +7 19 0.003963646 ubox +7 22 0.016669769 ubox +7 23 0.006395271 ubox +7 26 0.010803708 ubox +7 45 0.003325342 ubox +7 46 0.008388346 ubox +7 66 0.889354167 ubox +8 18 0.004993356 ubox +8 21 0.043576199 ubox +8 22 0.009051039 ubox +8 23 0.003412982 ubox +8 26 0.053349931 ubox +8 44 0.006391561 ubox +8 45 0.009575801 ubox +8 46 0.006511628 ubox +8 48 0.044296110 ubox +8 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