# HG changeset patch
# User rnateam
# Date 1506088021 14400
# Node ID cccf09a2f52149b9abe23a8e89457d257db0ceb6
# Parent  0960096dc963bc2b830624b4d76b29a9c24e9316
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit e3c20fec5dafc424d55a4de77304e79e3c88b76b-dirty

diff -r 0960096dc963 -r cccf09a2f521 rnaalifold.xml
--- a/rnaalifold.xml	Tue Jul 18 01:45:43 2017 -0400
+++ b/rnaalifold.xml	Fri Sep 22 09:47:01 2017 -0400
@@ -186,7 +186,7 @@
                 <!--	<when value="fromInput"></when> -->
                     <when value="none"></when>
                     <when value="fromFile">
-                        <param name="constraintsFile" type="data" format="*" label="Constraints file"/>
+                        <param name="constraintsFile" type="data" format="txt" label="Constraints file"/>
                         <param name="batch" type="boolean" checked="false" truevalue="--batch" falsevalue="" 
                             label="Use constraints for all alignment records" 
                             help="Usually, constraints provided from input file are only applied to a single sequence alignment. Therefore, RNAalifold will stop its computation and quit after the first input alignment was processed. Using this switch, RNAalifold processes all sequence alignments in the input and applies the same provided constraints to each of them." 
@@ -204,7 +204,7 @@
                         </param>
                         <when value ="isUsed">
                             <repeat name="shape_files" title="Shape File" default="0">
-                                <param type="data" name="shape" format="shape,*" label="Shape file" argument="--shape"/>
+                                <param type="data" name="shape" format="txt" label="Shape file" argument="--shape"/>
                             </repeat>
                                 <param name="m" type="float" value="1.8" label="Slope m" />
                                 <param name="b" type="float" value="-0.6" label="Intercept b" help="Currently, the only data conversion method available is that of to Deigan et al 2009. This method is the default. The slope 'm' and the intercept 'b' can be set to a non−default value if necessary. Otherwise m=1.8 and b=−0.6 as stated in the paper mentioned before."/>