Mercurial > repos > rnateam > viennarna_rnaeval
comparison rnaeval.xml @ 5:a3934747a65f draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit e3c20fec5dafc424d55a4de77304e79e3c88b76b-dirty
| author | rnateam |
|---|---|
| date | Fri, 22 Sep 2017 09:49:20 -0400 |
| parents | 4d59d9c739a5 |
| children |
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| 4:2994992b9ddd | 5:a3934747a65f |
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| 72 <param name="shapeSelector" type="select" label="Shape reactivity data"> | 72 <param name="shapeSelector" type="select" label="Shape reactivity data"> |
| 73 <option value="isUsed">Use shape reactivity data</option> | 73 <option value="isUsed">Use shape reactivity data</option> |
| 74 <option value="notUsed" selected="true">Don't use shape reactivity data</option> | 74 <option value="notUsed" selected="true">Don't use shape reactivity data</option> |
| 75 </param> | 75 </param> |
| 76 <when value ="isUsed"> | 76 <when value ="isUsed"> |
| 77 <param type="data" name="shapeFile" format="shape,*" label="Shape file" argument="--shape"/> | 77 <param type="data" name="shapeFile" format="txt" label="Shape file" argument="--shape"/> |
| 78 <conditional name="shapeMethod"> | 78 <conditional name="shapeMethod"> |
| 79 <param name="methodSelector" type="select" label="Shape reactivity data" argument="--shapeMethod"> | 79 <param name="methodSelector" type="select" label="Shape reactivity data" argument="--shapeMethod"> |
| 80 <option value="D" selected="true">D: Convert by using a linear equation according to Deigan et al 2009</option> | 80 <option value="D" selected="true">D: Convert by using a linear equation according to Deigan et al 2009</option> |
| 81 <option value="Z">Z: Convert SHAPE reactivities to pseudo energies according to Zarringhalam et al 2012.</option> | 81 <option value="Z">Z: Convert SHAPE reactivities to pseudo energies according to Zarringhalam et al 2012.</option> |
| 82 <option value="W">W: Apply a given vector of perturbation energies to unpaired nucleotides according to Washietl et al 2012</option> | 82 <option value="W">W: Apply a given vector of perturbation energies to unpaired nucleotides according to Washietl et al 2012</option> |