view test-data/Anolis_caro_chrUn_GL343590.trna2_AlaAGC_dp.ps @ 6:c7fe6d50a6ad draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit 36681a08c6e44c663169caaefd964781c43d0d29

%!PS-Adobe-3.0 EPSF-3.0
%%Title: RNA Dot Plot
%%Creator: ViennaRNA-2.2.10
%%CreationDate: Tue Dec 19 19:42:58 2017
%%BoundingBox: 66 211 518 662
%%DocumentFonts: Helvetica
%%Pages: 1
%%EndComments

%Options: 
% 
%This file contains the square roots of the base pair probabilities in the form
% i  j  sqrt(p(i,j)) ubox

%%BeginProlog
/DPdict 100 dict def
DPdict begin
/logscale false def
/lpmin 1e-05 log def

/box { %size x y box - draws box centered on x,y
   2 index 0.5 mul sub            % x -= 0.5
   exch 2 index 0.5 mul sub exch  % y -= 0.5
   3 -1 roll dup rectfill
} bind def

/ubox {
   logscale {
      log dup add lpmin div 1 exch sub dup 0 lt { pop 0 } if
   } if
   3 1 roll
   exch len exch sub 1 add box
} bind def

/lbox {
   3 1 roll
   len exch sub 1 add box
} bind def

/drawseq {
% print sequence along all 4 sides
[ [0.7 -0.3 0 ]
  [0.7 0.7 len add 0]
  [-0.3 len sub -0.4 -90]
  [-0.3 len sub 0.7 len add -90]
] {
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    aload pop rotate translate
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     dup 0 moveto
     sequence exch 1 getinterval
     show
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end
%%EndProlog
DPdict begin
%delete next line to get rid of title
270 665 moveto /Helvetica findfont 14 scalefont setfont (Anolis_caro_chrUn_GL343590.trna2_AlaAGC) show

/sequence { (\
UGGGAAUUAGCUCAAAUGGUAGAGCGCUCGCUUAGCAUGUGAGAGGUAGUGGGAUCGAUGCCCACAUUCUCCA\
) } def
/len { sequence length } bind def

72 216 translate
72 6 mul len 1 add div dup scale
/Helvetica findfont 0.95 scalefont setfont

drawseq
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% draw diagonal
0.04 setlinewidth
0 len moveto len 0 lineto stroke

/min { 2 copy gt { exch } if pop } bind def

/utri{ % i j prob utri
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  1 min 2 div
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  % now produce the coordinates for lines
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  % now produce the coordinates for lines
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} bind def
/lHmotif{ % i j lHmotif
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  1 min 2 div
  0.85 mul 0.15 add 0.95  0.99
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  % now produce the coordinates for lines
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/uImotif{ % i j k l uImotif
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  % now produce the coordinates for lines
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/lImotif{ % i j k l lImotif
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  1 min 2 div
  0.85 mul 0.15 add 0.95  0.99
  3 1 roll % prepare hsb color
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  % now produce the coordinates for lines
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  5 -1 roll len exch sub dup 6 -1 roll dup 3 1 roll 7 4 roll
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} bind def

%data starts here

%start of quadruplex data

%start of Hmotif data

%start of Imotif data

%draw the grid
drawgrid

%start of base pair probability data
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showpage
end
%%EOF