diff rnasubopt.xml @ 5:685d5971df5b draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/vienna_rna commit e3c20fec5dafc424d55a4de77304e79e3c88b76b-dirty

--- a/rnasubopt.xml	Tue Jul 18 01:51:43 2017 -0400
+++ b/rnasubopt.xml	Fri Sep 22 15:59:40 2017 -0400
@@ -135,7 +135,7 @@
             <!--	<when value="fromInput"></when> -->
                 <when value="none"></when>
                 <when value="fromFile">
-                    <param name="constraintsFile" type="data" format="*" label="Constraints file" argument="--constraint"/>
+                    <param name="constraintsFile" type="data" format="txt" label="Constraints file" argument="--constraint"/>
                     <param argument="--canonicalBPonly" type="boolean" truevalue="--canonicalBPonly" falsevalue="" checked="false" label="Remove non-canonical base pairs from the structure constraint" />
                     <param argument="--enforceConstraint" type="boolean" truevalue="--enforceConstraint" falsevalue="" checked="false" label="Enforce base pair given by round brackets () in structure constraint" />
                 </when>
@@ -147,7 +147,7 @@
                     <option value="notUsed" selected="true">Don't use shape reactivity data</option>
                 </param>
                 <when value ="isUsed">
-                    <param type="data" name="shapeFile" format="shape,*" label="Shape file" argument="--shape"/>
+                    <param type="data" name="shapeFile" format="txt" label="Shape file" argument="--shape"/>
                     <conditional name="shapeMethod">
                         <param name="methodSelector" type="select" label="Shape reactivity data" argument="--shapeMethod">
                             <option value="D" selected="true">D: Convert by using a linear equation according to Deigan et al 2009</option>