comparison bin/align.pm @ 52:945d903dad5a draft

Uploaded

51:6bd3e935d32b

sub get_unique
{
	my ( $sam, $s_uni, $out_prefix, $col_prefix, $details, $report ) = @_;

	my $fout = $col_prefix.'all_mappers.fastq'; 
	my $funi = $col_prefix.'unique_mappers.fastq';
	my $frej = $col_prefix.'unmapped.fastq';
	
  my $repartition = $out_prefix.'distribution.txt';
	my $png_rep = $out_prefix.'distribution.png';
	my ( %duplicates, %genome_hits) ;

52:945d903dad5a

sub get_unique
{
	my ( $sam, $s_uni, $out_prefix, $col_prefix, $details, $report ) = @_;

	my $fout = $col_prefix.'_all_mappers.fastq'; 
	my $funi = $col_prefix.'_unique_mappers.fastq';
	my $frej = $col_prefix.'_unmapped.fastq';
	
  my $repartition = $out_prefix.'distribution.txt';
	my $png_rep = $out_prefix.'distribution.png';
	my ( %duplicates, %genome_hits) ;