Mercurial > repos > romaingred > pirna_pipeline

comparison piPipe.xml @ 22:b9cf69322742 draft

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Uploaded
author romaingred
date Fri, 20 Oct 2017 08:35:06 -0400
parents 2be918bf0efe
children 02c46c8164a8
comparison
equal deleted inserted replaced
21:2bd100775c36 22:b9cf69322742
79 <requirement type="package" version="2.26.0">bedtools</requirement> 79 <requirement type="package" version="2.26.0">bedtools</requirement>
80 <requirement type="package" version="1.5">samtools</requirement> 80 <requirement type="package" version="1.5">samtools</requirement>
81 </requirements> 81 </requirements>
82 82
83 <inputs> 83 <inputs>
84 <param format="fastqsanger" name="first_input" type="data" label="fastq produced by fasteris" help=""/> 84 <param format="fastqsanger" name="first_input" type="data" label="fastqsanger (Q33)" help=""/>
85 <repeat name="input_files" title="Additional Fastq Files"> 85 <repeat name="input_files" title="Additional Fastq Files">
86 <param format="fastqsanger" name="additional_input" type="data" label="fastq produced by fasteris" help=""/> 86 <param format="fastqsanger" name="additional_input" type="data" label="fastqsanger (Q33)" help=""/>
87 </repeat> 87 </repeat>
88 <conditional name="Genome"> 88 <conditional name="Genome">
89 <param name="refGenomeSource" type="select" label="Will you select a reference genome from your history or use a built-in index?"> 89 <param name="refGenomeSource" type="select" label="Will you select a reference genome from your history or use a built-in index?">
90 <option value="indexed">Use a built-in index</option> 90 <option value="indexed">Use a built-in index</option>
91 <option value="history">Use one from the history</option> 91 <option value="history">Use one from the history</option>