comparison bin/align.pm @ 44:bd4b30bff219 draft

Uploaded

43:0be8011b3d98

	print $log "Creating index for $to_index\n";
}

sub get_unique
{
	my ( $sam, $s_uni, $prefix, $details, $report ) = @_;

	my $fout = $prefix.'all.fastq'; 
	my $funi = $prefix.'unique.fastq';
	my $frej = $prefix.'rejected.fastq';
	
  my $repartition = $prefix.'distribution.txt';
	my $png_rep = $prefix.'distribution.png';
	my ( %duplicates, %genome_hits) ;

44:bd4b30bff219

	print $log "Creating index for $to_index\n";
}

sub get_unique
{
	my ( $sam, $s_uni, $out_prefix, $col_prefix, $details, $report ) = @_;

	my $fout = $col_prefix.'all_mappers.fastq'; 
	my $funi = $col_prefix.'unique_mappers.fastq';
	my $frej = $col_prefix.'unmapped.fastq';
	
  my $repartition = $prefix.'distribution.txt';
	my $png_rep = $prefix.'distribution.png';
	my ( %duplicates, %genome_hits) ;