Mercurial > repos > romaingred > pirna_pipeline

diff bin/piPipe.pl @ 27:fe5a96def00e draft

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Uploaded
author romaingred
date Mon, 23 Oct 2017 08:28:55 -0400
parents 201e27bab5a0
children aea6ed0da85b
line wrap: on
line diff
--- a/bin/piPipe.pl	Mon Oct 23 08:19:47 2017 -0400
+++ b/bin/piPipe.pl	Mon Oct 23 08:28:55 2017 -0400
@@ -69,7 +69,7 @@
 open my $report, '>', $file or die "Cannot open $file $!\n";
 
 my @toBuild = ( [$build_index, \$ref],  [$build_tRNAs, \$tRNAs], [$build_rRNAs, \$rRNAs], [$build_snRNAs, \$snRNAs], [$build_miRNAs, \$miRNAs], [$build_exons, \$exons], [$build_TE, \$TE] );
-to_build ( \@toBuild, $report );
+to_build ( \@toBuild, $report, $dir );
 
 my $proc_child = ceil($max_procs / scalar(@fastq));
 my $proc_grand_child = ceil($proc_child/4);