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view tool-data/bwa_index.loc.sample @ 31:241aa6141cac draft

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author romaingred
date Tue, 28 Nov 2017 08:54:52 -0500
parents 1f1b6c9b09f1
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#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 phiX.fa.amb
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 phiX.fa.ann
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 phiX.fa.bwt
#...etc...
#
#Your bwa_index.loc file should include an entry per line for each
#index set you have stored. The "file" in the path does not actually
#exist, but it is the prefix for the actual index files.  For example:
#
#phiX174                                phiX    phiX174                 /depot/data2/galaxy/phiX/base/phiX.fa
#hg18canon                              hg18    hg18 Canonical  /depot/data2/galaxy/hg18/base/hg18canon.fa
#hg18full                               hg18    hg18 Full               /depot/data2/galaxy/hg18/base/hg18full.fa
#/orig/path/hg19.fa             hg19    hg19                    /depot/data2/galaxy/hg19/base/hg19.fa
#...etc...