# HG changeset patch
# User romaingred
# Date 1512136137 18000
# Node ID 851c8bbb32141b92ab11f4f81bb2c5a7d8a04dcc
# Parent  a034086659040879af12c8bd48bb1748fd7ca235
Uploaded

diff -r a03408665904 -r 851c8bbb3214 bin/piPipe.pl
--- a/bin/piPipe.pl	Fri Dec 01 08:14:22 2017 -0500
+++ b/bin/piPipe.pl	Fri Dec 01 08:48:57 2017 -0500
@@ -119,8 +119,8 @@
 	my $fastq_resized = $dir_fq.$name.'_'.$min.'-'.$max.'.fastq';
 	size_distribution (  $fastq[$child], $fastq_resized, $size_dir, $min, $max );
 
-	my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'.sam';
-	my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_'.$ref_name.'_unique.sam';
+	my $sam_genome = $gen_dir.$fastq_n[$child].'_'.$min.'-'.max.'sam';
+	my $sam_genome_unique = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max.'_unique.sam';
 	my $fastq_prefix = $gen_dir.$fastq_n[$child].'_'.$min.'-'.$max;
 
 	BWA_call ( $ref, $fastq_resized, $sam_genome, $mis, $proc_child, $report );