Mercurial > repos > romaingred > pirna_pipeline

changeset 52:945d903dad5a draft

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Uploaded
author romaingred
date Fri, 01 Dec 2017 09:33:36 -0500
parents 6bd3e935d32b
children bd91551eb3e1
files bin/align.pm
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/bin/align.pm	Fri Dec 01 09:33:22 2017 -0500
+++ b/bin/align.pm	Fri Dec 01 09:33:36 2017 -0500
@@ -42,9 +42,9 @@
 {
 	my ( $sam, $s_uni, $out_prefix, $col_prefix, $details, $report ) = @_;
 
-	my $fout = $col_prefix.'all_mappers.fastq'; 
-	my $funi = $col_prefix.'unique_mappers.fastq';
-	my $frej = $col_prefix.'unmapped.fastq';
+	my $fout = $col_prefix.'_all_mappers.fastq'; 
+	my $funi = $col_prefix.'_unique_mappers.fastq';
+	my $frej = $col_prefix.'_unmapped.fastq';
 	
   my $repartition = $out_prefix.'distribution.txt';
 	my $png_rep = $out_prefix.'distribution.png';