diff data_manager/data_manager_defense_finder.xml @ 0:a04c5659aac3 draft

planemo upload for repository https://gitlab.pasteur.fr/galaxy-team/galaxy-tools/-/tree/master/data_managers/data_manager_defense_finder commit cd90d22094f1128738ca4614b51d81af00a83d50

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_defense_finder.xml	Tue Sep 12 09:06:45 2023 +0000
@@ -0,0 +1,32 @@
+<tool id="defense_finder_models_fetcher_data_manager" name="DefenseFinder" tool_type="manage_data" version="@TOOL_VERSION@+galaxy0">
+    <description>genotype data fetcher</description>
+    <macros>
+        <token name="@TOOL_VERSION@">1.1.1</token>
+    </macros>
+    <requirements>
+        <requirement type="package" version="@TOOL_VERSION@">defense-finder</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        python '$__tool_directory__/defense_finder_models_fetcher.py' --out '${out_file}' --version '${model_version}'
+    ]]></command>
+    <inputs>
+        <param name="model_version" type="text" label="Defense finder models version" help="The available versions can be found at : https://github.com/mdmparis/defense-finder-models/releases"/>
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="model_version" value="1.2.2"/>
+            <output name="out_file" value="defense_finder_test_data_manager.json"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+Download Defense Finder models : https://github.com/mdmparis/defense-finder-models/
+check out the defense finder models versions from https://github.com/mdmparis/defense-finder-models/releases
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1038/s41467-022-30269-9</citation>
+        <citation type="doi">10.24072/pcjournal.250</citation>
+    </citations>
+</tool>