Mercurial > repos > rplanel > data_manager_defense_finder

changeset 4:502208b90cfe draft default tip

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planemo upload for repository https://gitlab.pasteur.fr/galaxy-team/galaxy-tools/-/tree/master/data_managers/data_manager_defense_finder commit b775193cea6a19a591981c9f8540c5c059b1e1ea
author pasteur
date Tue, 06 May 2025 09:15:22 +0000
parents 46528ab18f85
children
files data_manager/data_manager_defense_finder.xml data_manager_conf.xml test-data/defense_finder_test_data_manager.json tool_data_table_conf.xml.sample tool_data_table_conf.xml.test
diffstat 5 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_defense_finder.xml	Fri May 02 11:11:35 2025 +0000
+++ b/data_manager/data_manager_defense_finder.xml	Tue May 06 09:15:22 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="defense_finder_models_fetcher_data_manager" name="DefenseFinder" tool_type="manage_data" version="@TOOL_VERSION@+galaxy1" profile="21.05">
+<tool id="defense_finder_models_fetcher_data_manager" name="DefenseFinder" tool_type="manage_data" version="@TOOL_VERSION@+galaxy2" profile="21.05">
   <description>DefenseFinder models fetcher</description>
   <macros>
     <token name="@TOOL_VERSION@">2.0.0</token>
@@ -22,7 +22,7 @@
         "name": "version $model_version",
         "description": "MacSyFinder models allowing for a systematic search of anti-phage systems",
         "path": "defense-finder-models_$model_version",
-        "compatibility_version": "$software_compatibility"
+        "soft_compatibility_version": "$soft_compatibility_version"
       }
     ]
   }
@@ -30,7 +30,7 @@
   </configfiles>
   <inputs>
     <param name="model_version" type="text" label="Defense finder models version" help="The available versions can be found at : https://github.com/mdmparis/defense-finder-models/releases"/>
-    <param name="software_compatibility" type="text" label="List of defenseFinder versions compatibility" help="Enter the list of defenseFinder software versions that are compatible with the current model (e.g., 1.2.0,1.3.0,2.0.0). Separate multiple versions with commas if required."/>
+    <param name="soft_compatibility_version" type="text" label="List of defenseFinder versions compatibility" help="Enter the list of defenseFinder software versions that are compatible with the current model (e.g., 1.2.0,1.3.0,2.0.0). Separate multiple versions with commas if required."/>
   </inputs>
   <outputs>
     <data name="out_file" format="data_manager_json"/>
@@ -38,7 +38,7 @@
   <tests>
     <test>
       <param name="model_version" value="2.0.2"/>
-      <param name="software_compatibility" value="2.0.0"/>
+      <param name="soft_compatibility_version" value="2.0.0"/>
       <output name="out_file" value="defense_finder_test_data_manager.json"/>
     </test>
   </tests>
--- a/data_manager_conf.xml	Fri May 02 11:11:35 2025 +0000
+++ b/data_manager_conf.xml	Tue May 06 09:15:22 2025 +0000
@@ -8,7 +8,7 @@
                 <column name="dbkey" />
                 <column name="name" />
                 <column name="version" />
-                <column name="compatibility_version" />
+                <column name="soft_compatibility_version" />
                 <column name="description" />
                 <column name="path" output_ref="out_file">
                     <move type="directory" relativize_symlinks="True">
--- a/test-data/defense_finder_test_data_manager.json	Fri May 02 11:11:35 2025 +0000
+++ b/test-data/defense_finder_test_data_manager.json	Tue May 06 09:15:22 2025 +0000
@@ -8,7 +8,7 @@
         "name": "version 2.0.2",
         "description": "MacSyFinder models allowing for a systematic search of anti-phage systems",
         "path": "defense-finder-models_2.0.2",
-        "compatibility_version": "2.0.0"
+        "soft_compatibility_version": "2.0.0"
       }
     ]
   }
--- a/tool_data_table_conf.xml.sample	Fri May 02 11:11:35 2025 +0000
+++ b/tool_data_table_conf.xml.sample	Tue May 06 09:15:22 2025 +0000
@@ -1,6 +1,6 @@
 <tables>
     <table name="defense-finder-2" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, dbkey, name, version, soft compatibility version, description, path</columns>
+        <columns>value, dbkey, name, version, soft_compatibility_version, description, path</columns>
         <file path="tool-data/defense-finder.2.loc" />
     </table>
 </tables>
\ No newline at end of file
--- a/tool_data_table_conf.xml.test	Fri May 02 11:11:35 2025 +0000
+++ b/tool_data_table_conf.xml.test	Tue May 06 09:15:22 2025 +0000
@@ -1,6 +1,6 @@
 <tables>
     <table name="defense-finder-2" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, dbkey, name, version, soft compatibility version, description, path</columns>
+        <columns>value, dbkey, name, version, soft_compatibility_version, description, path</columns>
         <file path="${__HERE__}/test-data/defense-finder.2.loc" />
     </table>
 </tables>
\ No newline at end of file