Mercurial > repos > rsajulga > group_humann2_uniref_abundances_to_go

diff tool_dependencies.xml @ 0:bdc077ef0cdd draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/group_humann2_uniref_abundances_to_GO
author rsajulga
date Fri, 08 Mar 2019 15:04:11 -0500
parents
children fcc46fdac26b
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Mar 08 15:04:11 2019 -0500
@@ -0,0 +1,31 @@
+<?xml version="1.0" ?>
+<tool_dependency>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    </package>
+    <package name="fisher" version="0.1.4">
+        <repository changeset_revision="07479e0cbc5f" name="package_python_2_7_fisher_0_1_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    </package>
+    <package name="humann2" version="0.6.1">
+        <repository changeset_revision="48f412c4d0c9" name="package_humann2_0_6_1" owner="rsajulga" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    </package>
+    <package name="goatools" version="0.6.4">
+        <repository changeset_revision="25b614b3491f" name="package_goatools_0_6_4" owner="bebatut" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    </package>
+    <package name="group_humann2_uniref_abundances_to_go" version="1.2.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/jraysajulga/group_humann2_uniref_abundances_to_GO/archive/master.zip</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="GROUP_UNIREF_GO_DIR">$INSTALL_DIR/</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme/>
+    </package>
+</tool_dependency>
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