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1 <tool id="snp_filters" name="SNP filtering and pre-annotation">
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2 <requirements>
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3 <requirement type="package">SNVMix</requirement>
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4 </requirements>
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5 <description>further filtering and annotation of SNVMix calls</description>
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6 <command interpreter="python">
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7 snp_filters.py
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8 -i $input1
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9 -o $output1
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10 -c $output2
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11 -C $codon_resource
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12 -K $known_snp_resource
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13 </command>
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14 <inputs>
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15 <param name="input1" type="data" format="tabular" label="Select the filtered SNVMix output"></param>
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16 <param name="codon_resource" type="data" format="tabular" label="Select the codon_lookup file"></param>
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17 <param name="known_snp_resource" type="data" format="tabular" label="Select the all_known_snps file"></param>
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18 </inputs>
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19 <outputs>
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20 <data format="tabular" name="output1" label="${tool.name}: non-SNP positions" />
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21 <data format="tabular" name="output2" label="${tool.name}: Codon-associated non-SNP positions" />
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22 </outputs>
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23 <help>
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24
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25 **What it does**
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26
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27 </help>
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28 </tool>
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