Mercurial > repos > ryanmorin > nextgen_variant_identification
comparison SNV/SNVMix2_source/SNVMix2-v0.12.1-rc1/samtools-0.1.6/INSTALL @ 0:74f5ea818cea
Uploaded
author | ryanmorin |
---|---|
date | Wed, 12 Oct 2011 19:50:38 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:74f5ea818cea |
---|---|
1 System Requirements | |
2 =================== | |
3 | |
4 SAMtools depends on the zlib library <http://www.zlib.net>. The latest | |
5 version 1.2.3 is preferred and with the latest version you can compile | |
6 razip and use it to compress a FASTA file. SAMtools' faidx is able to | |
7 index a razip-compressed FASTA file to save diskspace. Older zlib also | |
8 works with SAMtools, but razip cannot be compiled. | |
9 | |
10 The text-based viewer (tview) requires the GNU ncurses library | |
11 <http://www.gnu.org/software/ncurses/>, which comes with Mac OS X and | |
12 most of the modern Linux/Unix distributions. If you do not have this | |
13 library installed, you can still compile the rest of SAMtools by | |
14 manually modifying one line in Makefile. | |
15 | |
16 | |
17 Compilation | |
18 =========== | |
19 | |
20 Type `make' to compile samtools. If you have zlib >= 1.2.2.1, you can | |
21 compile razip with `make razip'. | |
22 | |
23 | |
24 Installation | |
25 ============ | |
26 | |
27 Simply copy `samtools' and other executables/scripts in `misc' to a | |
28 location you want (e.g. a directory in your $PATH). No further | |
29 configurations are required. |