Mercurial > repos > ryanmorin > nextgen_variant_identification
comparison SNV/snp_filters.xml @ 0:74f5ea818cea
Uploaded
author | ryanmorin |
---|---|
date | Wed, 12 Oct 2011 19:50:38 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:74f5ea818cea |
---|---|
1 <tool id="snp_filters" name="SNP filtering and pre-annotation"> | |
2 <requirements> | |
3 <requirement type="package">SNVMix</requirement> | |
4 </requirements> | |
5 <description>further filtering and annotation of SNVMix calls</description> | |
6 <command interpreter="python"> | |
7 snp_filters.py | |
8 -i $input1 | |
9 -o $output1 | |
10 -c $output2 | |
11 -C $codon_resource | |
12 -K $known_snp_resource | |
13 </command> | |
14 <inputs> | |
15 <param name="input1" type="data" format="tabular" label="Select the filtered SNVMix output"></param> | |
16 <param name="codon_resource" type="data" format="tabular" label="Select the codon_lookup file"></param> | |
17 <param name="known_snp_resource" type="data" format="tabular" label="Select the all_known_snps file"></param> | |
18 </inputs> | |
19 <outputs> | |
20 <data format="tabular" name="output1" label="${tool.name}: non-SNP positions" /> | |
21 <data format="tabular" name="output2" label="${tool.name}: Codon-associated non-SNP positions" /> | |
22 </outputs> | |
23 <help> | |
24 | |
25 **What it does** | |
26 | |
27 </help> | |
28 </tool> |