Mercurial > repos > ryanmorin > nextgen_variant_identification
view SNV/snp_filters.xml @ 1:6d4997bc1c18
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author | ryanmorin |
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date | Wed, 12 Oct 2011 19:53:45 -0400 |
parents | 74f5ea818cea |
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<tool id="snp_filters" name="SNP filtering and pre-annotation"> <requirements> <requirement type="package">SNVMix</requirement> </requirements> <description>further filtering and annotation of SNVMix calls</description> <command interpreter="python"> snp_filters.py -i $input1 -o $output1 -c $output2 -C $codon_resource -K $known_snp_resource </command> <inputs> <param name="input1" type="data" format="tabular" label="Select the filtered SNVMix output"></param> <param name="codon_resource" type="data" format="tabular" label="Select the codon_lookup file"></param> <param name="known_snp_resource" type="data" format="tabular" label="Select the all_known_snps file"></param> </inputs> <outputs> <data format="tabular" name="output1" label="${tool.name}: non-SNP positions" /> <data format="tabular" name="output2" label="${tool.name}: Codon-associated non-SNP positions" /> </outputs> <help> **What it does** </help> </tool>