Mercurial > repos > ryo-tas > package_macs_1_4_2

diff tool_dependencies.xml @ 0:b1f4fd29629a

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author ryo_tas <yamanaka@genome.rcast.u-tokyo.ac.jp>
date Tue, 23 Dec 2014 18:12:45 +0900
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children 58e7660968d9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Dec 23 18:12:45 2014 +0900
@@ -0,0 +1,17 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="macs14" version="1.4.2">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/downloads/taoliu/MACS/MACS-1.4.2-1.tar.gz</action>
+                <action type="shell_command">export PYTHONPATH=$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --prefix $INSTALL_DIR --install-lib $INSTALL_DIR/lib/python</action>
+                <action type="set_environment">
+                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python/site-packages</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme></readme>
+    </package>
+</tool_dependency>