Mercurial > repos > s-kaufmann > synteny_mapper

comparison circos.conf @ 3:d8da7251bacf draft

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author s-kaufmann
date Mon, 10 Feb 2014 11:20:24 -0500
parents 67eb55a9debe
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2:67eb55a9debe 3:d8da7251bacf
1 <image> 1 <image>
2 png = yes 2 png = yes
3 dir = /home/users/kaufmann/Software/galaxy-dist/database/job_working_directory/000/230/dataset_329_files 3 dir = /home/steffi/Software/galaxy-dist/database/job_working_directory/000/105/dataset_164_files
4 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_329.dat.png 4 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_164.dat.png
5 radius = 750p 5 radius = 750p
6 background=white 6 background=white
7 image_map_use = yes 7 image_map_use = yes
8 image_map_name = circosmap 8 image_map_name = circosmap
9 angle_offset = -90 9 angle_offset = -90
10 auto_alpha_colors = yes 10 auto_alpha_colors = yes
11 auto_alpha_steps = 5 11 auto_alpha_steps = 5
12 </image> 12 </image>
13 karyotype = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_322.dat.karyotype 13 karyotype = /home/steffi/Software/galaxy-dist/database/files/000/dataset_162.dat.karyotype
14 chromosomes_units = 1000000 14 chromosomes_units = 1000000
15 chromosomes_display_default = no 15 chromosomes_display_default = no
16 <colors> 16 <colors>
17 <<include /home/users/kaufmann/Software/shed-tools/testtoolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/036a03435919/synteny_mapper/circos-files/colors.synteny.conf>> 17 <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/colors.synteny.conf>>
18 <<include /home/users/kaufmann/Software/shed-tools/testtoolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/036a03435919/synteny_mapper/circos-files/colors.mouse.conf>> 18 <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/colors.mouse.conf>>
19 </colors> 19 </colors>
20 chromosomes = hs44542;mm44542 20 chromosomes = hs44454;mm44454
21 chromosomes_reverse = mm44542
22 <highlights> 21 <highlights>
23 z = 5 22 z = 5
24 <highlight> 23 <highlight>
25 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.gene-track 24 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.gene-track
26 r0 = 0.9r 25 r0 = 0.9r
27 r1 = 0.99r 26 r1 = 0.99r
28 stroke_thickness = 1 27 stroke_thickness = 1
29 stroke_color = black 28 stroke_color = black
30 </highlight> 29 </highlight>
31 </highlights> 30 </highlights>
32 <plots> 31 <plots>
33 <plot> 32 <plot>
34 type=text 33 type=text
35 color=black 34 color=black
36 file=/home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.gene-track-labels 35 file=/home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.gene-track-labels
37 r0=0.99r 36 r0=0.99r
38 r1=1.5r 37 r1=1.5r
39 label_size=9 38 label_size=9
40 label_font=condensed 39 label_font=condensed
41 show_links=yes 40 show_links=yes
47 </plot> 46 </plot>
48 47
49 </plots> 48 </plots>
50 <links> 49 <links>
51 <link> 50 <link>
52 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.links 51 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.links
53 radius = 0.88r 52 radius = 0.88r
54 bezier_radius = 0r 53 bezier_radius = 0r
55 color = link_a4 54 color = link_a4
56 stroke_thickness = 1 55 stroke_thickness = 1
57 z = 10 56 z = 10
77 color = link_a4 76 color = link_a4
78 </rule> 77 </rule>
79 </rules> 78 </rules>
80 </link> 79 </link>
81 <link> 80 <link>
82 file = /home/users/kaufmann/Software/galaxy-dist/database/files/000/dataset_321.dat.jumped 81 file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_161.dat.jumped
83 radius = 0.88r 82 radius = 0.88r
84 bezier_radius = 0r 83 bezier_radius = 0r
85 color = link_jumped_a4 84 color = link_jumped_a4
86 stroke_thickness = 1 85 stroke_thickness = 1
87 z = 10 86 z = 10
107 color = link_jumped_a4 106 color = link_jumped_a4
108 </rule> 107 </rule>
109 </rules> 108 </rules>
110 </link> 109 </link>
111 </links> 110 </links>
112 <<include /home/users/kaufmann/Software/shed-tools/testtoolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/036a03435919/synteny_mapper/circos-files/synteny-region-default.conf>> 111 <<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/67eb55a9debe/synteny_mapper/circos-files/synteny-region-default.conf>>