comparison synteny-mapper.xml @ 3:d8da7251bacf draft

Uploaded

2:67eb55a9debe

    <data format="tabular" name="out_file2" label="Refined Synteny regions"/>
  </outputs>
  <tests>
    <test>
      <param name="inputSyntenyRegions" value="hom_sapi-mus_musc-synteny-v70"/>
      <param name="inputHomologousGenes" value="hom_sapi-mus_musc-homologs-v70"/>
      <param name="species1" value="homo_sapiens"/>
      <param name="species2" value="mus_musculus"/>
      <param name="filter" value="true"/>
      <!--<param name="header_lines" value="0"/>-->
      <output name="out_file1" file="mapping_test1.bed"/>
      <output name="out_file2" file="regions_test1.bed"/>
    </test>
  </tests>

  <help>

3:d8da7251bacf

    <data format="tabular" name="out_file2" label="Refined Synteny regions"/>
  </outputs>
  <tests>
    <test>
      <param name="inputSyntenyRegions" value="hom_sapi-mus_musc-synteny-v70"/>
      <param name="inputHomologousGenes" value="hom_sapi-mus_musc-orthologs-v70.filtered"/>
      <param name="species1" value="homo_sapiens"/>
      <param name="species2" value="mus_musculus"/>
      <param name="filter" value="true"/>
      <!--<param name="header_lines" value="0"/>-->
      <output name="out_file1" file="Gene_mapping1.out"/>
      <output name="out_file2" file="Refined_Synteny_regions2.out"/>
    </test>
  </tests>

  <help>