Mercurial > repos > s-kaufmann > synteny_mapper

comparison visualization.xml @ 3:d8da7251bacf draft

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author s-kaufmann
date Mon, 10 Feb 2014 11:20:24 -0500
parents 67eb55a9debe
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2:67eb55a9debe 3:d8da7251bacf
27 <outputs> 27 <outputs>
28 <data format="html" name="out_file1" label="Visualization of Mapping"/> 28 <data format="html" name="out_file1" label="Visualization of Mapping"/>
29 </outputs> 29 </outputs>
30 <tests> 30 <tests>
31 <test> 31 <test>
32 <param name="mappingFile" value="hom_sapi-mus_musc-output-mapping"/> 32 <param name="mappingFile" value="Gene_mapping1.out"/>
33 <param name="syntenyFile" value="hom_sapi-mus_musc-output-synteny"/> 33 <param name="syntenyFile" value="Refined_Synteny_regions2.out"/>
34 <param name="syntenyRegion" value="44542"/> 34 <param name="syntenyRegion" value="44454"/>
35 <output name="out_file3" file="visualization_test.png"/> 35 <output name="out_file3" file="visualization_test.html"/>
36 </test> 36 </test>
37 </tests> 37 </tests>
38 <help> 38 <help>
39 39
40 This tool visualizes the mapping of genes and out-of-order blocks of genes ("jumped genes") between two organisms for a given synteny region using Circos, effectively illustrating micro-rearrangements. 40 This tool visualizes the mapping of genes and out-of-order blocks of genes ("jumped genes") between two organisms for a given synteny region using Circos, effectively illustrating micro-rearrangements.