view circos.conf @ 25:1fdfbe87a959 draft default tip

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<image>
png = yes
dir = /home/steffi/Software/galaxy-dist/database/job_working_directory/000/117/dataset_187_files
file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_187.dat.png
radius = 750p
background=white
image_map_use = yes
image_map_name = circosmap
angle_offset = -90
auto_alpha_colors = yes
auto_alpha_steps  = 5
</image>
karyotype = /home/steffi/Software/galaxy-dist/database/files/000/dataset_185.dat.karyotype
chromosomes_units = 1000000
chromosomes_display_default = no
<colors>
<<include /home/steffi/Software/shed_tools/toolshed.g2.bx.psu.edu/repos/s-kaufmann/synteny_mapper/5d6d452a8e0b/synteny_mapper/circos-files/colors.synteny.conf>>
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</colors>
chromosomes = hs44454;mm44454
<highlights>
z = 5
<highlight>
file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_186.dat.gene-track
r0 = 0.9r
r1 = 0.99r
stroke_thickness = 1
stroke_color = black
</highlight>
</highlights>
<plots>
<plot>
type=text
color=black
file=/home/steffi/Software/galaxy-dist/database/files/000/dataset_186.dat.gene-track-labels
r0=0.99r
r1=1.5r
label_size=9
label_font=condensed
show_links=yes
link_dims = 0p,90p,20p,10p,20p
link_thickness=1
link_color=black
padding =0p
rpadding = 0p
</plot>

</plots>
<links>
<link>
file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_186.dat.links
radius = 0.88r
bezier_radius = 0r
color = link_a4
stroke_thickness = 1
z = 10
ribbon = yes
<rules>
<rule>
condition = var(size1) < 10 || var(size2) < 10
stroke_thickness = 5
flow = continue
</rule>
<rule>
condition = 1
z = eval(scalar min(var(size1),var(size2)))
flow = continue
</rule>
<rule>
condition = 1
stroke_color = link
flow = continue
</rule>
<rule>
condition = 1
color = link_a4
</rule>
</rules>
</link>
<link>
file = /home/steffi/Software/galaxy-dist/database/files/000/dataset_186.dat.jumped
radius = 0.88r
bezier_radius = 0r
color = link_jumped_a4
stroke_thickness = 1
z = 10
ribbon = yes
<rules>
<rule>
condition = var(size1) < 10 || var(size2) < 10
stroke_thickness = 5
flow = continue
</rule>
<rule>
condition = 1
z = eval(scalar min(var(size1),var(size2)))
flow = continue
</rule>
<rule>
condition = 1
stroke_color = link_jumped
flow = continue
</rule>
<rule>
condition = 1
color = link_jumped_a4
</rule>
</rules>
</link>
</links>
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