$REPOSITORY_INSTALL_DIR
$REPOSITORY_INSTALL_DIR
http://circos.ca/distribution/circos-0.64.tgz
.
$INSTALL_DIR/
$INSTALL_DIR
Downloads and installs Circos (v.0.64) for use in visualization. Requires perl to be installed.
$REPOSITORY_INSTALL_DIR
http://depot.galaxyproject.org/package/darwin/x86_64/R/R-3.0.2-Darwin-x86_64.tgz
.
$INSTALL_DIR
http://depot.galaxyproject.org/package/linux/x86_64/R/R-3.0.2-Linux-x86_64.tgz
.
$INSTALL_DIR
$INSTALL_DIR/lib/libtcl8.4.so
$INSTALL_DIR/lib/libtk8.4.so
http://cran.rstudio.com/src/base/R-3/R-3.0.2.tar.gz
export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIB_PATH" &&
export LDFLAGS="$LDFLAGS -Wl,-rpath,$READLINE_LIB_PATH" &&
export LDFLAGS="$LDFLAGS -Wl,-rpath,$PIXMAN_LIB_PATH" &&
export LDFLAGS="$LDFLAGS -Wl,-rpath,$PNG_LIB_PATH" &&
export LDFLAGS="$LDFLAGS -Wl,-rpath,$FREETYPE_LIB_PATH" &&
export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &&
export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &&
export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDE_PATH" &&
./configure --with-tcltk \
--with-blas \
--with-lapack \
--with-readline \
--with-cairo \
--with-libpng \
--without-x \
--enable-R-shlib \
--disable-R-framework \
--libdir=$INSTALL_DIR/lib \
--prefix=$INSTALL_DIR
sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/bin/R
sed -i.bak 's;$INSTALL_DIR;\${R_ROOT_DIR};g' $INSTALL_DIR/lib/R/bin/R
$INSTALL_DIR
$INSTALL_DIR/lib/R
$INSTALL_DIR/lib/R
$INSTALL_DIR/lib/R/library
$INSTALL_DIR/bin
The precompiled versions were built 2014-03-07.
R is a free software environment for statistical computing and graphics. http://www.r-project.org/