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Download

• SnpEff:
  • Download here the core program.
  • Use the 'download' command to download a database (see list of available databases below). E.g. to downlaod GRCh37.64, just run:

    java -jar snpEff.jar download GRCh37.64

• SnpSift You can download a JAR file here.

• MoreBs : Comming soon.

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Instruccions: Download SnpEff

• Step 1: Download the core program here.
• Step 2: Download the database/s you want to use. You can
  • Download manualy by clicking the link below, or
  • Use the 'download' command (see list of available databases below). E.g. to downlaod GRCh37.64, just run:

    java -jar snpEff.jar download GRCh37.64

  Organism	Source	Databases
  		Latest	Old
  Ailuropoda_melanoleuca	Ensembl	ailMel1.65	ailMel1.64 ailMel1.63 ailmel1.61
  Anolis_carolinensis	Ensembl	AnoCar2.0.65	AnoCar2.0.64 AnoCar2.0.63 anoCar2.0.61 anoCar1.0.60
  Anopheles_gambiae	VectorBase	agam 2.6	agam
  Aquilegia_coerulea	Ensembl	aquiCoer
  Arabidopsis_lyrata	Phytozome	alyrata107
  Arabidopsis_lyrata	JGI	alyrata1
  Arabidopsis_Thaliana	Phytozome	athaliana130
  Arabidopsis_Thaliana	TAIR	athalianaTair10	athalianaTair9
  Bee	BeeBase	amel2
  Bos_taurus	Ensembl	UMD3.1.65	UMD3.1.64 Btau_4.0.63 btau4.0.61 btau4.0.60 btau4.0.59
  Bos_taurus	Ensembl	UMD3_1
  Caenorhabditis_elegans	Ensembl	WS220.65	WS220.64 WS220.63 ce.WS220.61 ce.WS210.60 ce.WS201
  Callithrix_jacchus	Ensembl	C_jacchus3.2.1.65	C_jacchus3.2.1.64 C_jacchus3.2.1.63 calJac3.2.1.61 calJac3.2.1.60
  Candida_albicans_SC5314	CandidaGenome	cAlbicansv21
  Canis_familiaris	Ensembl	BROADD2.65	BROADD2.64 BROADD2.63 canFam2.61 canFam2.60 canFam2.59
  Capsella_rubella_v1.0	Ensembl	crubella
  Cavia_porcellus	Ensembl	cavPor3.65	cavPor3.64 cavPor3.63 cavPor3.61 cavPor3.60
  Choloepus_hoffmanni	Ensembl	choHof1.65	choHof1.64 choHof1.63 choHof1.61 choHof1.60
  Ciona_intestinalis	Ensembl	JGI2.65	JGI2.64 JGI2.63 cInt2.61 cInt2.60
  Ciona_savignyi	Ensembl	CSAV2.0.65	CSAV2.0.64 CSAV2.0.63 cSav2.0.61 cSav2.0.60
  Danio_rerio	Ensembl	Zv9.65	Zv9.64 Zv9.63 danRer9.61 danRer9.60 danRer8.59
  Dasypus_novemcinctus	Ensembl	dasNov2.65	dasNov2.64 dasNov2.63 dasNov2.61 dasNov2.60
  Dipodomys_ordii	Ensembl	dipOrd1.65	dipOrd1.64 dipOrd1.63 dipOrd1.61 dipOrd1.60
  Drosophila_melanogaster	Ensembl	BDGP5.25.65	BDGP5.25.64 BDGP5.25.63 dm5.25.63 dm5.25.61 dm5.25.60 dm5.25.59 dm5.22 dm5.12
  Drosophila_melanogaster	FlyBase	dm5.40	dm5.34 dm5.32 dm5.31 dm5.30
  Echinops_telfairi	Ensembl	TENREC.65	TENREC.64 TENREC.63 tenrec1.61 tenrec1.60
  Equus_caballus	Ensembl	EquCab2.65	EquCab2.64 EquCab2.63 equCab2.61 equCab2.60
  Erinaceus_europaeus	Ensembl	HEDGEHOG.65	HEDGEHOG.64 HEDGEHOG.63 eriEur1.61 eriEur1.60
  Felis_catus	Ensembl	CAT.65	CAT.64 CAT.63 cat1.61 cat1.60
  Gallus_gallus	Ensembl	WASHUC2.65	WASHUC2.64 WASHUC2.63 ggallus2.61 ggallus2.60 ggallus2.59
  Gasterosteus_aculeatus	Ensembl	BROADS1.65	BROADS1.64 BROADS1.63 gacu1.61 gacu1.60
  Gorilla_gorilla	Ensembl	gorGor3.1.65	gorGor3.1.64 gorGor3.63 gorGor3.61 gorGor3.60
  Hiv	NCBI	hiv
  HIV	NCBI	SIVmac239
  Homo_sapiens	Ensembl	GRCh37.65	GRCh37.64 GRCh37.63 hg37.63 hg37.61 hg37.60 hg37.59 hg36.54
  Homo_sapiens	UCSC	hg19
  Loxodonta_africana	Ensembl	loxAfr3.65	loxAfr3.64 loxAfr3.63 loxAfr3.61 loxAfr3.60
  Macaca_mulatta	Ensembl	MMUL_1.65	MMUL_1.64 MMUL_1.63 mmul1.61 mmul1.60
  Macropus_eugenii	Ensembl	Meug_1.0.65	Meug_1.0.64 Meug_1.0.63 meug1.0.61 meug1.0.60
  Maize	MaizeSequence.org	maizeZmB73
  Meleagris_gallopavo	Ensembl	UMD2.65	UMD2.64 UMD2.63 UMD2.61
  Microcebus_murinus	Ensembl	micMur1.65	micMur1.64 micMur1.63 micMur1.61 micMur1.60
  Monodelphis_domestica	Ensembl	BROADO5.65	BROADO5.64 BROADO5.63 monDom5.61 monDom5.60
  Mus_musculus	Ensembl	NCBIM37.65	NCBIM37.64 NCBIM37.63 mm37 mm37.61 mm37.60 mm37.59
  Mycoplasma_pneumoninae_FH	Ensembl	myco_fh
  Mycoplasma_pneumoninae_M129	Ensembl	myco_m129
  Myotis_lucifugus	Ensembl	Myoluc2.0.65	Myoluc2.0.64 Myoluc2.0.63 myoLuc1.61 myoLuc1.60
  Neurospora_Crassa	Broad	ncrassa
  Nomascus_leucogenys	Ensembl	Nleu1.0.65	Nleu1.0.64 Nleu1.0.63
  Ochotona_princeps	Ensembl	pika.65	pika.64 pika.63 ochPri2.61 ochPri2.60
  Ornithorhynchus_anatinus	Ensembl	OANA5.65	OANA5.64 OANA5.63 oana5.61 oana5.60
  Oryctolagus_cuniculus	Ensembl	oryCun2.65	oryCun2.64 oryCun2.63 oryCun2.61 oryCun2.60
  Oryzias_latipes	Ensembl	MEDAKA1.65	MEDAKA1.64 MEDAKA1.63 medaka1.61 medaka1.60
  Otolemur_garnettii	Ensembl	BUSHBABY1.65	BUSHBABY1.64 BUSHBABY1.63 bushBaby1.61 bushBaby1.60
  Pan_troglodytes	Ensembl	CHIMP2.1.65	CHIMP2.1.64 CHIMP2.1.63 chimp2.1.61 chimp2.1.60 chimp2.1.59
  Peach	PlantGDB	ppersica139
  Peromyscus leucopus	Ensembl	peromyscus
  Petromyzon_marinus	Ensembl	Petromyzon_marinus_7.0.65	Petromyzon_marinus_7.0.64
  Plasmodium_falciparum	PlasmoDb	plasmo72
  Pongo_abelii	Ensembl	PPYG2.65	PPYG2.64 PPYG2.63
  Pongo_pygmaeus	Ensembl	ppyg2.61	ppyg2.60
  Procavia_capensis	Ensembl	proCap1.65	proCap1.64 proCap1.63 proCap1.61 proCap1.60
  Pseudomonas_aeruginosa	NCBI	paeru.PA01
  Pseudomonas_aeruginosa	NCBI	paeru.PA14
  Pseudomonas_fluorescens	NCBI	pfluo.SBW25.NC_009444
  Pseudomonas_fluorescens	NCBI	pfluo.SBW25.NC_012660
  Pteropus_vampyrus	Ensembl	pteVam1.65	pteVam1.64 pteVam1.63 pteVam1.61 pteVam1.60
  Rattus_norvegicus	Ensembl	RGSC3.4.65	RGSC3.4.64 RGSC3.4.63 rat3.4.61 rat3.4.60 rat3.4.59
  Rice	RAP-DB	rice5
  Rice	MSU	rice6.1
  Saccharomyces_cerevisiae	Ensembl	EF3.65	EF3.64 EF3.63 sacCer2.61 sacCer2.60 sacCer2.59 sacCer2
  Sarcophilus_harrisii	Ensembl	DEVIL7.0.65	DEVIL7.0.64
  Schizosaccharomyces_pombe	Sanger	spombe
  Sorex_araneus	Ensembl	COMMON_SHREW1.65	COMMON_SHREW1.64 COMMON_SHREW1.63 sorAra1.61 sorAra1.60
  Spermophilus_tridecemlineatus	Ensembl	SQUIRREL.65	SQUIRREL.64 SQUIRREL.63 speTri1.61 speTri1.60
  Sus_scrofa	Ensembl	Sscrofa9.65	Sscrofa9.64 Sscrofa9.63 sScrofa9.61 sScrofa9.60
  Taeniopygia_guttata	Ensembl	taeGut3.2.4.65	taeGut3.2.4.64 taeGut3.2.4.63 taeGut3.2.4.61 taeGut3.2.4.60
  Takifugu_rubripes	Ensembl	FUGU4.65	FUGU4.64 FUGU4.63 fugu4.61 fugu4.60
  Tarsius_syrichta	Ensembl	tarSyr1.65	tarSyr1.64 tarSyr1.63 tarSyr1.61 tarSyr1.60
  Tetraodon_nigroviridis	Ensembl	TETRAODON8.65	TETRAODON8.64 TETRAODON8.63 tetraodon8.61 tetraodon8.60
  Tupaia_belangeri	Ensembl	TREESHREW.65	TREESHREW.64 TREESHREW.63 tupBel1.61 tupBel1.60
  Tursiops_truncatus	Ensembl	turTru1.65	turTru1.64 turTru1.63 turTru1.61 turTru1.60
  Vaccinia_Western_Reserve	NCBI	vacwr
  Vibrio Cholerae	Ensembl	vibrio
  Vicugna_pacos	Ensembl	vicPac1.65	vicPac1.64 vicPac1.63 vicPac1.61 vicPac1.60
  Xenopus_tropicalis	Ensembl	JGI_4.2.64	JGI_4.2.64 JGI_4.2.63 xtrop4.1.61 xtrop4.1.60
  Xenopus_tropicalis	XenBase	xtrop7.1