Mercurial > repos > saharlcc > isoem2_isode2
annotate IsoEM.loc @ 5:240c34061675 draft
Uploaded
| author | saharlcc |
|---|---|
| date | Mon, 19 Sep 2016 22:06:23 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 5 | 1 #This file has file paths for the GTF, cluster file and tmap and hisat2 indices for IsoEM2 |
| 2 | |
| 3 #NOTE: All entries in this file MUST be tab-delimited | |
| 4 | |
| 5 #Every entry has the following 5 fields: | |
| 6 #Reference name <GTF> <TMAP_INDEX> <HISAT2_INDEX> <Cluster file> | |
| 7 | |
| 8 | |
| 9 | |
| 10 mm10-RefSeq77 /import1/GTF/mm10RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/mm10RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt | |
| 11 hg38-RefSeq77 /import1/GTF/hg38RefSeq77UCSCAug29-2016.gtf /import1/tmap-index/tmap3.4.1/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/hisat2-index/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta /import1/GTF/hg38RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt | |
| 12 |