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view IsoEM.loc.sample @ 9:ce0a125b3cd1 draft

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author saharlcc
date Mon, 19 Sep 2016 22:10:01 -0400
parents aa9875d90894
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#This file has file paths for the GTF, cluster file and tmap and hisat2  indices for IsoEM2 

#NOTE: All entries in this file MUST be tab-delimited

#Every entry has the following 5 fields:
#Reference name	<GTF>	<TMAP_INDEX> <HISAT2_INDEX> <Cluster file>



mm10-RefSeq77	/import1/GTF/mm10RefSeq77UCSCAug29-2016.gtf	/import1/tmap-index/tmap3.4.1/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/hisat2-index/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/GTF/mm10RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
hg38-RefSeq77	/import1/GTF/hg38RefSeq77UCSCAug29-2016.gtf	/import1/tmap-index/tmap3.4.1/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/hisat2-index/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/GTF/hg38RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt