# HG changeset patch
# User saharlcc
# Date 1474337183 14400
# Node ID 240c340616754a87fe1406c800140eb45768aa2c
# Parent  2e3d3451541b8c76a587cc1f0f233f0577c17700
Uploaded

diff -r 2e3d3451541b -r 240c34061675 IsoEM.loc
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IsoEM.loc	Mon Sep 19 22:06:23 2016 -0400
@@ -0,0 +1,12 @@
+#This file has file paths for the GTF, cluster file and tmap and hisat2  indices for IsoEM2 
+
+#NOTE: All entries in this file MUST be tab-delimited
+
+#Every entry has the following 5 fields:
+#Reference name	<GTF>	<TMAP_INDEX> <HISAT2_INDEX> <Cluster file>
+
+
+
+mm10-RefSeq77	/import1/GTF/mm10RefSeq77UCSCAug29-2016.gtf	/import1/tmap-index/tmap3.4.1/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/hisat2-index/mm10-RefSeq77/mm10RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/GTF/mm10RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
+hg38-RefSeq77	/import1/GTF/hg38RefSeq77UCSCAug29-2016.gtf	/import1/tmap-index/tmap3.4.1/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/hisat2-index/hg38-RefSeq77/hg38RefSeq77UCSCAug29-2016GTF-polyA200.fasta	/import1/GTF/hg38RefSeq77UCSCAug29-2016_TranscriptIDGeneName.txt
+	
\ No newline at end of file