view chasm_webservice/test-data/chasm_output_genes.tabular @ 0:99d838cef41a draft default tip

Uploaded

#Gene Level Analysis Report
#2014-08-28 22:54:22.487967
#CRAVAT version: 3.1
#Analysis done at http://www.cravat.us.
#Input file: dataset_1.dat
#This report shows analysis results at gene level.
#The composite p-value (Stouffer's combined p-value) and composite FDR of a gene show how probable it is to get the same p-value distribution for the gene as that obtained from the input variants by chance.
#Input coordinate was hg19 genomic.
#Tissue type for CHASM analysis: Other
#For more information on CRAVAT, visit http://www.cravat.us.
#
HUGO symbol	Driver Genes	TARGET	Best driver score from representative transcripts	Occurrences in study [gene mutated]	Occurrences in COSMIC [gene mutated]	Occurrences in COSMIC by primary sites [gene mutated]	MuPIT link
MTMR3			0.582	1	103	upper_aerodigestive_tract(2);large_intestine(24);haematopoietic_and_lymphoid_tissue(5);endometrium(12);urinary_tract(4);oesophagus(1);breast(6);skin(17);lung(17);ovary(5);NS(1);prostate(2);kidney(4);liver(3)	 
ZNRF3			0.524	2	73	upper_aerodigestive_tract(2);large_intestine(19);autonomic_ganglia(1);haematopoietic_and_lymphoid_tissue(2);endometrium(12);urinary_tract(2);lung(16);liver(5);skin(1);oesophagus(3);ovary(2);NS(1);prostate(2);kidney(3);breast(2)	 
MKL1			0.668	2	68	large_intestine(15);stomach(2);central_nervous_system(1);haematopoietic_and_lymphoid_tissue(3);endometrium(13);urinary_tract(1);lung(19);breast(3);skin(1);ovary(5);kidney(4);liver(1)